PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00585.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 271aa    MW: 29580.9 Da    PI: 10.2882
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00585.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-162065147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    rg W + Ed++l+++v ++G+ +W++Ia+++  gR++k+c++rw++ 
  Zmw_sc00585.1.g00100.1.sm.mkhc 20 RGHWRPGEDQKLKELVDMYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 65
                                    899*****************************.***********996 PP
2Myb_DNA-binding61.81.4e-1973116247
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                      ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ +
  Zmw_sc00585.1.g00100.1.sm.mkhc  73 RPFTEEEEERLLAAHRAHGNK-WALIARHFP-GRTDNAVKNHWHVV 116
                                     69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3761566IPR017930Myb domain
SuperFamilySSF466891.76E-2918113IPR009057Homeodomain-like
SMARTSM007174.2E-131968IPR001005SANT/Myb domain
PfamPF002494.1E-162065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-262173IPR009057Homeodomain-like
CDDcd001676.63E-132364No hitNo description
PROSITE profilePS5129428.467121IPR017930Myb domain
SMARTSM007173.8E-1771119IPR001005SANT/Myb domain
PfamPF002491.6E-1672115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2274119IPR009057Homeodomain-like
CDDcd001671.26E-883117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MASSSTTNTS NGAKSSSCPR GHWRPGEDQK LKELVDMYGP QNWNSIAEKL EGRSGKSCRL  60
RWFNQLDPRI NKRPFTEEEE ERLLAAHRAH GNKWALIARH FPGRTDNAVK NHWHVVMARR  120
SRERSRLLAR TAHSSSSPSS YPFVTDGAQQ PGSSLCFGFS KSRLGSSGGL FGSSPAAPRI  180
PFFKSYGTIN GGTGASFEVG RYSYGGKQPA ATPLSISFSS PREALGMDLG HGFHGGNDIN  240
KKDYHVDGGD DTMSTRKDVP FIDFLGVGVS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31201207107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979129.11e-119transcription factor CSA
TrEMBLA0A1E5UNM71e-118A0A1E5UNM7_9POAL; Transcription factor MYB44
STRINGSi026751m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260