PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00583.1.g00380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 111aa    MW: 12636.2 Da    PI: 9.2137
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00583.1.g00380.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.71.7e-2712109286
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvk 69 
                                    Yn YA++vGFs+r+s ++ s r+g++++r+fvC keg+r+ ++k+             + k rrt+a+tr+gCka+++vk
  Zmw_sc00583.1.g00380.1.am.mk  12 LYNVYAHRVGFSTRISVMHWSPRDGTVMSRQFVCAKEGFRTYQSKSelaradagtgdedSGKGRRTHAVTRVGCKAMIRVK 92 
                                   6*******************************************99***********99999******************* PP

                          FAR1  70 kekdgkwevtkleleHn 86 
                                   k+++g+w vtkle+ Hn
  Zmw_sc00583.1.g00380.1.am.mk  93 KQDNGRWTVTKLETAHN 109
                                   ****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2512109IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEFDDEEDAW PLYNVYAHRV GFSTRISVMH WSPRDGTVMS RQFVCAKEGF RTYQSKSELA  60
RADAGTGDED SGKGRRTHAV TRVGCKAMIR VKKQDNGRWT VTKLETAHNL P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631605.19e-56protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A0D9ZB842e-56A0A0D9ZB84_9ORYZ; Uncharacterized protein
TrEMBLA0A1E5WFJ18e-56A0A1E5WFJ1_9POAL; Protein FAR1-RELATED SEQUENCE 5
STRINGOGLUM03G28710.14e-57(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967