PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00583.1.g00380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | FAR1 | ||||||||
Protein Properties | Length: 111aa MW: 12636.2 Da PI: 9.2137 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.7 | 1.7e-27 | 12 | 109 | 2 | 86 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvk 69 Yn YA++vGFs+r+s ++ s r+g++++r+fvC keg+r+ ++k+ + k rrt+a+tr+gCka+++vk Zmw_sc00583.1.g00380.1.am.mk 12 LYNVYAHRVGFSTRISVMHWSPRDGTVMSRQFVCAKEGFRTYQSKSelaradagtgdedSGKGRRTHAVTRVGCKAMIRVK 92 6*******************************************99***********99999******************* PP FAR1 70 kekdgkwevtkleleHn 86 k+++g+w vtkle+ Hn Zmw_sc00583.1.g00380.1.am.mk 93 KQDNGRWTVTKLETAHN 109 ****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-25 | 12 | 109 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MEFDDEEDAW PLYNVYAHRV GFSTRISVMH WSPRDGTVMS RQFVCAKEGF RTYQSKSELA 60 RADAGTGDED SGKGRRTHAV TRVGCKAMIR VKKQDNGRWT VTKLETAHNL P |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631605.1 | 9e-56 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A0A0D9ZB84 | 2e-56 | A0A0D9ZB84_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A1E5WFJ1 | 8e-56 | A0A1E5WFJ1_9POAL; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | OGLUM03G28710.1 | 4e-57 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |