PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00575.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 453aa MW: 48661.3 Da PI: 4.5837

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00575.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	126	173	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ ++ g+ R++k+c++rw +yl Zmw_sc00575.1.g00260.1.am.mk 126 RGSWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 173 89****************************99**********97 PP
2	Myb_DNA-binding	49.5	1e-15	179	224	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l Zmw_sc00575.1.g00260.1.am.mk 179 RGNFTVDEEETIIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 224 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-23	117	176	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.36	121	173	IPR017930	Myb domain
SuperFamily	SSF46689	2.43E-29	123	220	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-12	125	175	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-15	126	173	IPR001005	SANT/Myb domain
CDD	cd00167	4.10E-10	128	173	No hit	No description
PROSITE profile	PS51294	24.544	174	228	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-25	177	227	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-14	178	226	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-14	179	224	IPR001005	SANT/Myb domain
CDD	cd00167	3.03E-10	181	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MNSSAARPEL KIILSSTRVG SLGALAEQLE PRTASFPGRR VWTRKSGRGG AAILSALAYI 60 YPCSSRQLPI RAQCSASFID HPSKPQFWSL EEWQLEGDGG EIGGRVVVSD MGRGRAPCCD 120 KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI NYLRPDLKRG 180 NFTVDEEETI IKLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKAAQ REQPKAGSTK 240 EDGAAPITSS SASSSTSTAN SSGDVGEQCG TSQEPDAIPP PLETDIDISG MLVDAFPAMA 300 APMPPQSSPC SSSTLTTSST CVGGGGVEDL IELPVIDIEP DIWDIIDGAA DVPDVWGAGH 360 GDATVPCTGA TVSTSEAGEG EASDWWLENL ERELGLCGPP EDSRAQSDLL LADTEGDPVS 420 NYFQNGPAIA ELSDRLPLCY DQRDESSAFD QEW

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MNSSAARPEL KIILSSTRVG SLGALAEQLE PRTASFPGRR VWTRKSGRGG AAILSALAYI  60
YPCSSRQLPI RAQCSASFID HPSKPQFWSL EEWQLEGDGG EIGGRVVVSD MGRGRAPCCD  120
KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI NYLRPDLKRG  180
NFTVDEEETI IKLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKAAQ REQPKAGSTK  240
EDGAAPITSS SASSSTSTAN SSGDVGEQCG TSQEPDAIPP PLETDIDISG MLVDAFPAMA  300
APMPPQSSPC SSSTLTTSST CVGGGGVEDL IELPVIDIEP DIWDIIDGAA DVPDVWGAGH  360
GDATVPCTGA TVSTSEAGEG EASDWWLENL ERELGLCGPP EDSRAQSDLL LADTEGDPVS  420
NYFQNGPAIA ELSDRLPLCY DQRDESSAFD QEW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-26	124	227	25	127	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814304.1	1e-144	myb-related protein Zm1-like
Swissprot	P20024	1e-136	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A2S3GS79	1e-143	A0A2S3GS79_9POAL; Uncharacterized protein
STRING	Pavir.Aa01159.1.p	1e-135	(Panicum virgatum)
STRING	GRMZM5G833253_P01	1e-135	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]