PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00573.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 226aa    MW: 24573.8 Da    PI: 4.5846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00573.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-101301764290
                                   TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                            B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                   +grsW   ++ + k ++  + + W++Fv +n+L++gD +vF+l+g +e+
  Zmw_sc00573.1.g00020.1.sm.mk 130 RGRSWATSYCGDLKCKK--FDRAWRDFVVDNRLRVGDACVFELVGADET 176
                                   69*******66655555..89**********************987554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1494176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-1395175IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-1198172No hitNo description
PfamPF023622.6E-8130176IPR003340B3 DNA binding domain
PROSITE profilePS508639.418130199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
METPASSACP WKQLPEDASA KWELDAGIKP KLPDPCTTFK LDAGVKPKLP DACATFKPEA  60
GVEPKPEPCE EDAPPLSPLA GDAADDDWEI TPVSGNHPFF TTVMSQSHVQ KSLQLRHLPA  120
ARVPAVLLCR GRSWATSYCG DLKCKKFDRA WRDFVVDNRL RVGDACVFEL VGADETEAEA  180
EAEGRRNGGE KAVVVFRVQV LRGGLPEEIT SKGATSDEPL VIVDYD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811196.11e-71B3 domain-containing protein Os06g0112300-like isoform X1
SwissprotQ9LHY97e-38Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A2T8JF474e-70A0A2T8JF47_9POAL; Uncharacterized protein
STRINGPavir.Db02470.1.p5e-65(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]