PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00573.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 226aa MW: 24573.8 Da PI: 4.5846 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.9 | 1.2e-10 | 130 | 176 | 42 | 90 |
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +grsW ++ + k ++ + + W++Fv +n+L++gD +vF+l+g +e+ Zmw_sc00573.1.g00020.1.sm.mk 130 RGRSWATSYCGDLKCKK--FDRAWRDFVVDNRLRVGDACVFELVGADET 176 69*******66655555..89**********************987554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-14 | 94 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-13 | 95 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.86E-11 | 98 | 172 | No hit | No description |
Pfam | PF02362 | 2.6E-8 | 130 | 176 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.418 | 130 | 199 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
METPASSACP WKQLPEDASA KWELDAGIKP KLPDPCTTFK LDAGVKPKLP DACATFKPEA 60 GVEPKPEPCE EDAPPLSPLA GDAADDDWEI TPVSGNHPFF TTVMSQSHVQ KSLQLRHLPA 120 ARVPAVLLCR GRSWATSYCG DLKCKKFDRA WRDFVVDNRL RVGDACVFEL VGADETEAEA 180 EAEGRRNGGE KAVVVFRVQV LRGGLPEEIT SKGATSDEPL VIVDYD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811196.1 | 1e-71 | B3 domain-containing protein Os06g0112300-like isoform X1 | ||||
Swissprot | Q9LHY9 | 7e-38 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A2T8JF47 | 4e-70 | A0A2T8JF47_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db02470.1.p | 5e-65 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Publications ? help Back to Top | |||
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