PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00570.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 266aa MW: 30429.3 Da PI: 6.623

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00570.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Zmw_sc00570.1.g00220.1.am.mkhc 30 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 77 79********************************************97 PP
2	Myb_DNA-binding	55.6	1.2e-17	83	128	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Zmw_sc00570.1.g00220.1.am.mkhc 83 RGRMTPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 128 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.259	25	77	IPR017930	Myb domain
SuperFamily	SSF46689	2.57E-29	29	124	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-15	29	79	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-16	30	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-20	31	84	IPR009057	Homeodomain-like
CDD	cd00167	3.63E-11	32	77	No hit	No description
PROSITE profile	PS51294	25.994	78	132	IPR017930	Myb domain
SMART	SM00717	1.1E-16	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-15	83	127	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-24	85	131	IPR009057	Homeodomain-like
CDD	cd00167	8.86E-12	85	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
HAEEEEQEDR LLADTRVYVA MVTVREETRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS 60 GLNRTGKSCR LRWVNYLHPG LKRGRMTPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI 120 KNYWRTHMRK KAQERKRNMS PSSSSSSLTY QSCYPDTPPI IGAEGQELHG GSGCITSILK 180 GTPPDMEVYP LDQFWLEVDE PEAPHPVTGF DGLKLQDLPC SSSSSLPGPL PPSAGDYYYP 240 EACWKMDDEI KMAQQFGYGE GAGPCF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	7e-28	27	132	1	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-27	30	132	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-27	30	132	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	9e-28	30	132	4	105	C-Myb DNA-Binding Domain
1msf_C	9e-28	30	132	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962720.1	1e-142	myb-related protein MYBAS2
Swissprot	Q4JL76	1e-124	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	K3Z983	1e-141	K3Z983_SETIT; Uncharacterized protein
STRING	Si023104m	1e-141	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]