PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00570.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 347aa    MW: 38916.9 Da    PI: 6.8344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00570.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-1450111148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqkyl 48 
                                   rg+WT +Ed+ lv++++ +G g+W++ a   g              ++Rt+k+c++rw++yl
  Zmw_sc00570.1.g00070.1.am.mk  50 RGPWTVDEDLALVNYITDHGEGRWNSLAPAAGhhplfslsylhargLKRTGKSCRLRWLNYL 111
                                   89**********************************************************97 PP
2Myb_DNA-binding353.3e-11117171146
                                   TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHH.HTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........tWktIart.mgkgRtlkqcksrwqk 46 
                                   rg +T++E++ ++d++ ++G++         ++++ a++ ++ gRt++++k++w++
  Zmw_sc00570.1.g00070.1.am.mk 117 RGDFTADEHLHILDLHSRYGNRwppvdhalpRPTRLAHHhLP-GRTDNEIKNYWRT 171
                                   899*******************99999999999999975255.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1944114IPR009057Homeodomain-like
PROSITE profilePS5129417.93245115IPR017930Myb domain
SuperFamilySSF466893.11E-2148169IPR009057Homeodomain-like
SMARTSM007171.4E-1149113IPR001005SANT/Myb domain
PfamPF002495.7E-1250111IPR001005SANT/Myb domain
CDDcd001671.98E-852111No hitNo description
Gene3DG3DSA:1.10.10.601.4E-17115176IPR009057Homeodomain-like
SMARTSM007171.6E-6116175IPR001005SANT/Myb domain
PROSITE profilePS512948.911116177IPR017930Myb domain
PfamPF002491.0E-8117171IPR001005SANT/Myb domain
CDDcd001672.66E-5120171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASSSQSSRS RTCTPAATTD AALARCPVVP FDDERNEGAH DKEERAELRR GPWTVDEDLA  60
LVNYITDHGE GRWNSLAPAA GHHPLFSLSY LHARGLKRTG KSCRLRWLNY LRPDVKRGDF  120
TADEHLHILD LHSRYGNRWP PVDHALPRPT RLAHHHLPGR TDNEIKNYWR TRVQKHAKQL  180
NCDANSQRFK DAMRYLWTPS LVDSHRFLNA NAAGSDHQDD GYYLTAALSG VGVTYPSSDS  240
LVTTTSEPHD ASFPARKRGE LYSYADVRAG EETMAVSSGD WCAARETSQQ QAPGMMWPGE  300
QKAAQAVRGA GARFEDPELS GWVQSFSEVV DATDSSFWTL DDVWKTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-184717524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962755.14e-97transcription factor JAMYB
TrEMBLK3Z8G18e-96K3Z8G1_SETIT; Uncharacterized protein
STRINGPavir.Cb00499.1.p5e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330