PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00567.1.g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 227aa MW: 23835.7 Da PI: 8.7019 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 84.5 | 1.2e-26 | 10 | 60 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eC++NhAa+lG++a DGC+E++p+ ++++aa+ CaACgCHRnFHR+ Zmw_sc00567.1.g00210.1.sm.mk 10 EVYRECMRNHAANLGTYASDGCCEYTPD---DAHPAAMLCAACGCHRNFHRKAF 60 68*************************8...678*****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.2E-21 | 11 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.3E-20 | 12 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-20 | 12 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.059 | 12 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.78E-15 | 103 | 176 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 105 | 176 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.9E-27 | 115 | 176 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEQHQERPRE VYRECMRNHA ANLGTYASDG CCEYTPDDAH PAAMLCAACG CHRNFHRKAF 60 LDAVSGALGA ASPHSSPMLR SPGAAPAGYG MHMGVAPTAA AGMGGGDAHG SAGRRRTRTK 120 FTEEQKERML RFAERLGWRM PKREPGRALG DDDVARFCRE IGVTRQVFKV WMHNHKVGGG 180 GAGAGGAAQT SSSTTRGGGG GAGGGGGSMS PAIGEDDEEV RGSRMSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-18 | 114 | 183 | 17 | 80 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798159.1 | 4e-96 | zinc-finger homeodomain protein 11-like | ||||
Swissprot | A2XLF4 | 6e-87 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 6e-87 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A2T8I0V5 | 1e-94 | A0A2T8I0V5_9POAL; Uncharacterized protein | ||||
STRING | Sb01g010020.1 | 2e-95 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9204 | 32 | 43 |