PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00566.1.g00390.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 874aa    MW: 96493.7 Da    PI: 11.2859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00566.1.g00390.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.24.6e-30166270199
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed++g  W+++++y+++s++yv+tkGW++Fvk+++L++g
  Zmw_sc00566.1.g00390.1.am.mk 166 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGMPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 246
                                   89***************************955556888******************************************* PP

                                   -EEEEEE-.SS.SEE..EEEEE-S CS
                            B3  78 DfvvFkld.gr.sefelvvkvfrk 99 
                                   D+v F +  g+  +++l++ ++r+
  Zmw_sc00566.1.g00390.1.am.mk 247 DTVSFGRGvGEhARGRLFIDWRRR 270
                                   ******655888999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-39160274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-28163271IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-23164251No hitNo description
PROSITE profilePS5086314.071166271IPR003340B3 DNA binding domain
PfamPF023625.5E-27166270IPR003340B3 DNA binding domain
SMARTSM010191.1E-20166271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MCPAVPFLAL PPHSLSRGQR RSRPASRLHY SMAHSSYPHR TLQPWRRSSS TIEGTQTAPS  60
SLLPLATQLE LAQWKERKAA RTGCSAALRF ASPAYRPSPF RRPGVKAAAA LHPGRERGRR  120
EVGGVGAAYM PRPQLDHHLA MTTELTAGPI RSGACGIDAV EKEHMFDKVV TPSDVGKLNR  180
LVIPKQHAEK YFPLDAAANE KGLLLSFEDR TGMPWRFRYS YWNSSQSYVM TKGWSRFVKE  240
KRLDAGDTVS FGRGVGEHAR GRLFIDWRRR PDPPAPYYQY RIPIPASVPL APWAPHGIGG  300
ARTVLHHLPP SPSTFYDSHH RRHDAYTPSG RLFYRPHQHQ HQHQHQQATV VLESVPVRIP  360
TAPGHAEPPL VASSGSKRLR LFGVNLDCAA GSEEENGKSW RSAPPQLPSS PRSSSSSSSG  420
KASRRPERGS FQSTARKFKR GGGGGRRLEE HLAICESQLG LAFQAAKLLG DERRHVSFKC  480
GRLGSKRRPS HGLSSSLSRG QAVMGELQLI CRACQERART TDPSLWLAPI PRVRPLGEDR  540
PSSECDGGPG SGSSIKTAVV HRNLIYCAGL PSDQRLAIHN KCLIEIKEYR GGSSKRQQQK  600
IDRKSERPKE TKSGSKEKLL LRVAKRGQEP RTATALSPRG KAKKASMQHA ESYRSVSLLL  660
TGSSPQGVSR IKPKKRTFYY TNKRPDWRLL LFTPLSRWSA EKNGGVRDTE AISRSWTPAG  720
ARAASTHGAF ISGHDLIRDE TTGTQDTDQT EPGAPTGVPK RQPPWDVWTM GLGLLHRRPV  780
AGRRDQSAVR PLFHKACRMR AAGLDEFRWV VMVPRQVGQV VSLVTASNLA SVERANSAMK  840
GTRHMAQAQL VSVETNRGRA WGAPATWVGD AVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-581612713114B3 domain-containing transcription factor NGA1
5os9_B3e-581612713114B3 domain-containing transcription factor NGA1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168