PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00565.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 813aa    MW: 87753.1 Da    PI: 6.0411
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00565.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.78.3e-132072451856
                                   HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                    F+ + +p++e+r+ LA k+g++ +qVk WFqNrR + k
  Zmw_sc00565.1.g00030.1.am.mk 207 SFKWCAHPDEEMRKALAVKIGMEPTQVKHWFQNRRSQNK 245
                                   699999*****************************9988 PP
2START45.52e-153655433159
                                   HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                         START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWde 74 
                                   ae+a +e++++a+a+ p+W   +   e +n  e+  +  +         + + + r++g+v +++ +lv  l d + +W++
  Zmw_sc00565.1.g00030.1.am.mk 365 AERAVREFLALAAAGVPMWLPTAgdgEVLNFGEYAARMFPRLLgacpdgFVSMTTRETGIVWATPRDLVGVLTDAG-RWSQ 444
                                   6889999999999999999999998855665555555544333578777899999*********************.**** PP

                                   T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TT CS
                         START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sss 141
                                   +++    +++  +v ssg      g +ql++ael + sp vp   + f+R+++  +++ +w++vdvS+d    + +    +
  Zmw_sc00565.1.g00030.1.am.mk 445 MFPgivaAVTARDVGSSGmlgsadGLIQLINAELWVQSPRVPnHSVKFLRFTKMmENGRQWAVVDVSIDAILAVGQegGVE 525
                                   ***998666666777777************************999*********99999**********999988656677 PP

                                   SEE-EESSEEEEEEEECT CS
                         START 142 vvRaellpSgiliepksn 159
                                     R++l pSg+lie++++
  Zmw_sc00565.1.g00030.1.am.mk 526 HTRCGLMPSGCLIEEMDG 543
                                   78************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.001199251IPR001356Homeobox domain
PROSITE profilePS5007112.017205247IPR001356Homeobox domain
CDDcd000865.82E-10205245No hitNo description
Gene3DG3DSA:1.10.10.601.4E-11206248IPR009057Homeodomain-like
SuperFamilySSF466896.84E-11206247IPR009057Homeodomain-like
PfamPF000463.7E-10207245IPR001356Homeobox domain
PROSITE patternPS000270222245IPR017970Homeobox, conserved site
PROSITE profilePS5084816.517354575IPR002913START domain
SuperFamilySSF559616.78E-11362553No hitNo description
PfamPF018522.6E-9365542IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MPNKFKQQGP RVGLVEHLHD VDRRPPERRR NPGSKRAVGG GGPSGREARE IGGGESPGIG  60
EARLEIRSHR AVGEADPDLA AGRERIYVGS WVVLADDRER EKRETCWRKK MIFSPLDCYQ  120
VIMENEGAQN NSKIQDVSLT IGTDHATEQV SRENEGAHHT SNVDDASLTT GTDDASEQIW  180
DSEEFDIDAL LEDEDASAST DNDAQHSFKW CAHPDEEMRK ALAVKIGMEP TQVKHWFQNR  240
RSQNKANEVS TTFASTLVSP LHPTGVVKSL SQANNQLHGQ NAFLKAENVE LRKRVLERSC  300
FACVCLMAPP ELLTGKQRLI VENARLKEAY QRAQTRLKEL SRGAPLPLAA PSIAQDHATL  360
LLHHAERAVR EFLALAAAGV PMWLPTAGDG EVLNFGEYAA RMFPRLLGAC PDGFVSMTTR  420
ETGIVWATPR DLVGVLTDAG RWSQMFPGIV AAVTARDVGS SGMLGSADGL IQLINAELWV  480
QSPRVPNHSV KFLRFTKMME NGRQWAVVDV SIDAILAVGQ EGGVEHTRCG LMPSGCLIEE  540
MDGDGNKGMM EMARRMTASF YAAISGPATL PGSNVSEWRG GSGARGAESF EASVRMVMWT  600
CAGGVPGRPA SAQVLSAVTT VWLPGTAPRL VLDYLCDERR RGEWDVRAAG AEVNGLGSII  660
TGNLHGNAIS IFRPDGTDAT NEKMLVLQET CSDKSCSMVV YSPIEETTLL AIANGGDPAS  720
SFFLPSGFAI LPDGHRKASR APSATASSSS GAPPPWHRTT TGCLLTAAYQ TLLPDQPPTA  780
NRPAGAFDVV GKQLCFAIEK VKDAVEANVV VAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197109REREKRETCWRKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742