PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00561.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 420aa    MW: 45575.2 Da    PI: 7.5293
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00561.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18114166456
                                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++++ +q+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Zmw_sc00561.1.g00160.1.am.mk 114 KRRLSVDQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 166
                                   447999**********************************************9 PP
2HD-ZIP_I/II125.32.8e-40112202191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   e+krrls +qv++LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy aL+r++da ++en++L 
  Zmw_sc00561.1.g00160.1.am.mk 112 ERKRRLSVDQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYVALRRQLDAARAENDALL 192
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   +++++L++e+
  Zmw_sc00561.1.g00160.1.am.mk 193 AQNKKLHAEV 202
                                   ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-1987169IPR009057Homeodomain-like
SuperFamilySSF466891.28E-18111170IPR009057Homeodomain-like
SMARTSM003892.6E-18111172IPR001356Homeobox domain
PROSITE profilePS5007116.714112168IPR001356Homeobox domain
CDDcd000861.92E-16113169No hitNo description
PfamPF000461.1E-15114166IPR001356Homeobox domain
PRINTSPR000316.9E-6139148IPR000047Helix-turn-helix motif
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PRINTSPR000316.9E-6148164IPR000047Helix-turn-helix motif
PfamPF021832.3E-9168202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKPMATNGMA PSFFPANFLL QMQQPLPHHH HHPQQQDHPH HHDHEQHLLA PPPPSLSPFL  60
HDFAGAMAPP PMYPPDAGVS NDLHAEPPQQ QDGDAASDDE EGSAAAGGCV GERKRRLSVD  120
QVRTLERSFE VANKLEPERK AQLARALGLQ PRQVAIWFQN RRARWKTKQL EKDYVALRRQ  180
LDAARAENDA LLAQNKKLHA EVGDRTIHVG FNVICRKRAC RDRCRPYEHW ASCRPPMHRS  240
LCAACTMISH SIYPTNRHLA IGGPTPFCVR VVMRIMALKG GGGGGGGGRQ EAASELINLN  300
VKETEASCSN RSENSSEINL DISRPAPAAE ESPMNSHRAA ALPFYASAVG GRSGGGGGSS  360
LDIDQLLQHN HASPKMELGH GGGADTAGAA VSFGSLLCGG AVVDEQPPFW PWAADGHNFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116ERKRRL
2160168RRARWKTKQ
3278288KGGGGGGGGGR
4349357GGRSGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151416.25e-84homeobox-leucine zipper protein HAT7
TrEMBLA0A1E5V6C71e-88A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRINGPavir.Ia02126.1.p5e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4666423