PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00551.1.g00390.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 415aa    MW: 45302.3 Da    PI: 6.605
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00551.1.g00390.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-18206261256
                                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   ++++++t+eq+++Le  Fe+ ++++  e+++eLA++lg+  rqV vWFqNrRa+++
  Zmw_sc00551.1.g00390.1.am.mk 206 KTKRRLTAEQVQALEVSFEEeKQKLEPERKRELARRLGIAPRQVAVWFQNRRARWR 261
                                   67889**************98**********************************9 PP
2HD-ZIP_I/II115.14.1e-37207298292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                    krrl++eqv++LE sFeee+ kLeperK elar+Lg+ prqvavWFqnrRAR++tkqlE+d+ +L+ a+d+l + +++L 
  Zmw_sc00551.1.g00390.1.am.mk 207 TKRRLTAEQVQALEVSFEEEKqKLEPERKRELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFYSLRVAHDELLAGRDALV 287
                                   69****************9988*********************************************************** PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++Lr+++ 
  Zmw_sc00551.1.g00390.1.am.mk 288 ADNDRLRSQVI 298
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.19E-16201265IPR009057Homeodomain-like
PROSITE profilePS5007117.508202263IPR001356Homeobox domain
SMARTSM003891.4E-16204267IPR001356Homeobox domain
PfamPF000461.3E-15206261IPR001356Homeobox domain
CDDcd000862.27E-15206264No hitNo description
Gene3DG3DSA:1.10.10.601.2E-18209268IPR009057Homeodomain-like
PRINTSPR000319.4E-6234243IPR000047Helix-turn-helix motif
PROSITE patternPS000270238261IPR017970Homeobox, conserved site
PRINTSPR000319.4E-6243259IPR000047Helix-turn-helix motif
PfamPF021832.1E-11263305IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MFAALLLFKL IITTNFLFIL LLARPSTRGL SFRVTQRLER LSATKSTLSS RQLVIVSGRR  60
VAQACTDETP IHPRRRCYGV VAVHHEVIND PHAVEHQLLP PQIPRRSVIL PIKLAPAGWT  120
ATSVFQEEVE ERNSAASFCA TGGGGSGGQV LLFGGGGGFC GGAAPMAASA GAENGRRKRP  180
CLTAHEELRL DQLCGLEYEL QGVPEKTKRR LTAEQVQALE VSFEEEKQKL EPERKRELAR  240
RLGIAPRQVA VWFQNRRARW RTKQLEQDFY SLRVAHDELL AGRDALVADN DRLRSQVINL  300
TEKLQAKEQT APSAATGTKT MEAAVLLVQL DDDQLRETIS GEVWPAQGFP GGANSASPES  360
YFAGAPSPPS SSEGDCGDEG SAPLLPDAML LAVAAQLEHG GGHDAGEDSW EWFWN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462311.12e-74homeobox-leucine zipper protein HOX25
SwissprotA3BYC13e-64HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
STRINGPavir.J04192.1.p2e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735