PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00551.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 289aa    MW: 30902.6 Da    PI: 7.6314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00551.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21110159255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Zmw_sc00551.1.g00070.1.am.mk 110 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 159
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-30109169No hitNo description
SMARTSM003801.5E-35110173IPR001471AP2/ERF domain
PROSITE profilePS5103223.354110167IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-23110169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-33110169IPR001471AP2/ERF domain
PRINTSPR003672.4E-11111122IPR001471AP2/ERF domain
PfamPF008477.1E-15111159IPR001471AP2/ERF domain
PRINTSPR003672.4E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASAPHGST SVLPHQLPSP PSPFAFHHAA AASYSPYAAG  60
VEGAGQLSPA QMQYIQARLH LQRQAQSVLG PRAQPMKASA AAPQPRPQKL YRGVRQRHWG  120
KWVAEIRLPR NRTRLWLGTF DTAEEAALAY DQAAYRLRGD AARLNFPDNA ASRAPLHSSV  180
DAKLQMLCQN IAASKKASKA GAVAAATSSS APTSNCSSPS SDDASSTSCL ESAESFSPSL  240
SRSPSPEAAK VPEMQQLDFS EAPWDEAAGF ALTKYPSYEI DWDSLLAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20109167463ATERF1
3gcc_A3e-20109167463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956678.11e-152ethylene-responsive transcription factor RAP2-13
TrEMBLK3ZVQ31e-151K3ZVQ3_SETIT; Uncharacterized protein
STRINGSi030684m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203