PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00550.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 436aa MW: 46688.6 Da PI: 4.1346

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00550.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	62.3	1e-19	40	85	5	50
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtsea 50 ++lPian++r+mkk +Pa+++i+kdake +q+cv+efisf+tse Zmw_sc00550.1.g00160.1.sm.mk 40 GKYLPIANIARVMKKEVPARGQITKDAKEAMQHCVTEFISFITSEV 85 589*****************************************95 PP
2	NF-YB	37	8.2e-12	106	149	51	94
NF-YB 51 sdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 s +++++krktingddl+ ++ +G+e+y+e l++yl+kyr+ + Zmw_sc00550.1.g00160.1.sm.mk 106 SYNVKEDKRKTINGDDLIRTMDMIGLEKYAELLRIYLTKYRKSD 149 5578999**********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-29	40	161	IPR009072	Histone-fold
SuperFamily	SSF47113	4.99E-12	42	86	IPR009072	Histone-fold
Pfam	PF00808	6.7E-13	43	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-10	70	88	No hit	No description
PRINTS	PR00615	1.3E-10	109	127	No hit	No description
SuperFamily	SSF47113	5.09E-7	110	162	IPR009072	Histone-fold
PRINTS	PR00615	1.3E-10	128	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MGPRIGGGPR VLAEAGFPAM ADDSGKGNQE GVGESEDVRG KYLPIANIAR VMKKEVPARG 60 QITKDAKEAM QHCVTEFISF ITSEVCVVFI SAGIDSDSGG YAFRTSYNVK EDKRKTINGD 120 DLIRTMDMIG LEKYAELLRI YLTKYRKSDN KLTKGGDDSE EMGAINSHVG TKSSTNEPIL 180 LGDNQGMSYI EPQCDNMLST KGGDASVTMD ATNPYSGTSS STIQSDNMLS PKGGDDSLMM 240 DAIDLYGGTS SSPNQSDNML STKGGDGSIM MDAIDLYGGT SSSPNQSDNM LSTKGGDGSI 300 MMDAMDLYGG TSSSPNQVIS HGVYNQGMAP MEPQSMSTKS GNDSVMMDAV NLHGGISSTT 360 NQSDNILSIK GGDDSVTMDT INLYGDISSP TNQLIPHGVY NQGMANMEPR NQYFDEDVTQ 420 YFDEDVIDPQ YHDEDV

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MGPRIGGGPR VLAEAGFPAM ADDSGKGNQE GVGESEDVRG KYLPIANIAR VMKKEVPARG  60
QITKDAKEAM QHCVTEFISF ITSEVCVVFI SAGIDSDSGG YAFRTSYNVK EDKRKTINGD  120
DLIRTMDMIG LEKYAELLRI YLTKYRKSDN KLTKGGDDSE EMGAINSHVG TKSSTNEPIL  180
LGDNQGMSYI EPQCDNMLST KGGDASVTMD ATNPYSGTSS STIQSDNMLS PKGGDDSLMM  240
DAIDLYGGTS SSPNQSDNML STKGGDGSIM MDAIDLYGGT SSSPNQSDNM LSTKGGDGSI  300
MMDAMDLYGG TSSSPNQVIS HGVYNQGMAP MEPQSMSTKS GNDSVMMDAV NLHGGISSTT  360
NQSDNILSIK GGDDSVTMDT INLYGDISSP TNQLIPHGVY NQGMANMEPR NQYFDEDVTQ  420
YFDEDVIDPQ YHDEDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-25	41	147	6	92	Transcription factor HapC (Eurofung)
4g92_B	1e-25	41	147	6	92	Transcription factor HapC (Eurofung)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP45106	3	3