PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00549.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 637aa MW: 68126.8 Da PI: 9.3415

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00549.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98	7e-31	419	471	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaAC+CHRnFHR+e+ Zmw_sc00549.1.g00200.1.am.mk 419 RYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACNCHRNFHRKESP 471 8***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-26	395	472	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.7E-29	419	469	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-28	419	470	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.752	420	469	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.24E-19	562	635	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-31	564	636	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.5E-25	574	630	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MDSDEHACHQ PGPQSTPTKI ANGKQRAPSS RRRPCMDHRH HRSRRMETSD PVSRSREKDR 60 RITGLAACGH PRRLPLDPAL TAGLIAPATV EIRPPPKTRL ARVFLLWTKH TSSQATCRPV 120 VKQQAARITH AGVGIEAYPP SEPRESVTWA LPGWDKQEVP YSLGGGLFGT NQAGQMEGAQ 180 PACRGEVACS LPCPHFRCLL FRSAVGDRRE ANTVNWTKRT APLEALPAKI DGVVYSSVTS 240 CVGAKPLEKS SGERDSHAAK KAMSATQRNA ISSPVQVSGG REIGQERTER GLRGPSCSKR 300 AAPLQNWQPD GVHTLSYLLI SLLTLLSRSL SFACHNSRSQ TQEAPASCLL ASEAAMDFDD 360 HDDGDEEMAP LPPVLSSSYE TPPQSAAFGG GVAPAAKPPS EPGSRANKAP GGGGGGSGRY 420 RECLKNHAVG IGGHAVDGCG EFMAAGEEGT LDALRCAACN CHRNFHRKES PTAEGSPISP 480 AAIVAYGAMP HQQFSPYYRT PAGYFHHTPH HMAAAAAAAG HHSRPLALPS TSHSGRDDVD 540 DLSGMAGPMS ALGPLSGMSL GAGPSGSGGS GSGKKRFRTK FTQEQKDRML VFSERLGWRI 600 QKHDEAAVQQ FCDEVGVKRH VLKVWMHNNK HTLGKKP

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MDSDEHACHQ PGPQSTPTKI ANGKQRAPSS RRRPCMDHRH HRSRRMETSD PVSRSREKDR  60
RITGLAACGH PRRLPLDPAL TAGLIAPATV EIRPPPKTRL ARVFLLWTKH TSSQATCRPV  120
VKQQAARITH AGVGIEAYPP SEPRESVTWA LPGWDKQEVP YSLGGGLFGT NQAGQMEGAQ  180
PACRGEVACS LPCPHFRCLL FRSAVGDRRE ANTVNWTKRT APLEALPAKI DGVVYSSVTS  240
CVGAKPLEKS SGERDSHAAK KAMSATQRNA ISSPVQVSGG REIGQERTER GLRGPSCSKR  300
AAPLQNWQPD GVHTLSYLLI SLLTLLSRSL SFACHNSRSQ TQEAPASCLL ASEAAMDFDD  360
HDDGDEEMAP LPPVLSSSYE TPPQSAAFGG GVAPAAKPPS EPGSRANKAP GGGGGGSGRY  420
RECLKNHAVG IGGHAVDGCG EFMAAGEEGT LDALRCAACN CHRNFHRKES PTAEGSPISP  480
AAIVAYGAMP HQQFSPYYRT PAGYFHHTPH HMAAAAAAAG HHSRPLALPS TSHSGRDDVD  540
DLSGMAGPMS ALGPLSGMSL GAGPSGSGGS GSGKKRFRTK FTQEQKDRML VFSERLGWRI  600
QKHDEAAVQQ FCDEVGVKRH VLKVWMHNNK HTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-25	575	632	18	75	ZF-HD homeobox family protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69