PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00539.1.g00480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HSF | ||||||||
Protein Properties | Length: 118aa MW: 13100.8 Da PI: 9.0223 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 85.2 | 8.7e-27 | 41 | 103 | 2 | 64 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkk 64 Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+Y ++ Zmw_sc00539.1.g00480.1.sm.mk 41 FLTKTYQLVDDPAVNDIISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYVSRR 103 9**********************************************************6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-29 | 32 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-30 | 37 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.27E-25 | 38 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.8E-23 | 41 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-18 | 41 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-18 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-18 | 92 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MAAEQPAGEP SPPPLPSAHP PAPAERAPSP LASQRSVPTP FLTKTYQLVD DPAVNDIISW 60 NDDGSAFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYV SRRVATSFIF SHLVSLRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-19 | 20 | 105 | 15 | 93 | Heat shock factor protein 1 |
5d5v_B | 7e-19 | 20 | 105 | 15 | 93 | Heat shock factor protein 1 |
5d5v_D | 7e-19 | 20 | 105 | 15 | 93 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319939.1 | 3e-43 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q652B0 | 2e-40 | HFB2C_ORYSJ; Heat stress transcription factor B-2c | ||||
Swissprot | Q6Z9C8 | 6e-41 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A1Z5RAH8 | 7e-42 | A0A1Z5RAH8_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A1Z5RAL7 | 7e-42 | A0A1Z5RAL7_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G098696_P02 | 7e-42 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Publications ? help Back to Top | |||
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