PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00539.1.g00350.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 359aa MW: 37104 Da PI: 8.651

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00539.1.g00350.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	195.9	1.3e-60	169	304	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq 83 +g++sCqdCGnqakkdCah+RCRtCCksrgfdC thvkstWvpaakrrerqqql+a a++ skr r++ Zmw_sc00539.1.g00350.1.am.mk 169 AGSISCQDCGNQAKKDCAHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQQLTAG--------AAEPSKRLRDS----- 236 6889***********************************************9987........45567777764..... PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ t+ +++++++ +++P+evsseavfrcvr++ vd++++e+aYqt+vsi+GhvfkGiL+d G++ Zmw_sc00539.1.g00350.1.am.mk 237 ATP--TSSGGQQQHQMVVGERFPREVSSEAVFRCVRLGPVDEDDAEVAYQTSVSIAGHVFKGILHDVGPD 304 222..2222344556778889*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.3E-59	171	304	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.7E-28	173	215	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-22	255	303	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MVAIAGAGNL PPPPQPLATR AKTGQNSREP ISRNPDSWLL GHGDEASAHK AEFKCTSSST 60 RRGGHADAGS AAETRLLGSR DATRNGRSAP ARGGGSHGRG DDHPSSAAYL YTTAPPRGAA 120 GFQLWPQLQA PVQEHSFYAP NIIRFADDPA AGASSSSRGG RGSASGLGAG SISCQDCGNQ 180 AKKDCAHMRC RTCCKSRGFD CPTHVKSTWV PAAKRRERQQ QLTAGAAEPS KRLRDSATPT 240 SSGGQQQHQM VVGERFPREV SSEAVFRCVR LGPVDEDDAE VAYQTSVSIA GHVFKGILHD 300 VGPDPSVAGG GMMIRHAAEG SSPSTAAAGE GGSVSAAPVS SSAAVMDPYP TPGPYGWAP

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MVAIAGAGNL PPPPQPLATR AKTGQNSREP ISRNPDSWLL GHGDEASAHK AEFKCTSSST  60
RRGGHADAGS AAETRLLGSR DATRNGRSAP ARGGGSHGRG DDHPSSAAYL YTTAPPRGAA  120
GFQLWPQLQA PVQEHSFYAP NIIRFADDPA AGASSSSRGG RGSASGLGAG SISCQDCGNQ  180
AKKDCAHMRC RTCCKSRGFD CPTHVKSTWV PAAKRRERQQ QLTAGAAEPS KRLRDSATPT  240
SSGGQQQHQM VVGERFPREV SSEAVFRCVR LGPVDEDDAE VAYQTSVSIA GHVFKGILHD  300
VGPDPSVAGG GMMIRHAAEG SSPSTAAAGE GGSVSAAPVS SSAAVMDPYP TPGPYGWAP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821984.1	1e-116	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9FXH7	3e-51	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A3L6PPK2	1e-125	A0A3L6PPK2_PANMI; Protein SHI RELATED SEQUENCE 1-like
STRING	Pavir.Fb02329.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]