PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00539.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 757aa    MW: 79864 Da    PI: 8.8566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00539.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05182204123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+k F r  nL+ H r H
  Zmw_sc00539.1.g00110.1.am.mk 182 FVCEVCNKGFQREQNLQLHRRGH 204
                                   89*******************88 PP
2zf-C2H212.70.00039258280123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zmw_sc00539.1.g00110.1.am.mk 258 WKCDKCNKRYAVQSDWKAHSKTC 280
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.86E-7181204No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5181204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.094182204IPR007087Zinc finger, C2H2
PfamPF121715.1E-5182204IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0041182204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SMARTSM00355300223253IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-5246279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.86E-7253278No hitNo description
SMARTSM00355110258278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MDRPAANFTS SQVSLPTDRV RAAATAAAWV ALREETGGEA NSHGQGMVKG MSIFQVVPGR  60
GSTVQVTVLV LPLASEISHP ATLGIWIESG RLLVSKEHTL PLRHLDSSIE IDGGCLFVRV  120
LVRTRRRADA ADAAAAGRAC SSSGAEQPRS SHAGAQEEEE SARQPKQVIA LSPKTLLATN  180
RFVCEVCNKG FQREQNLQLH RRGHNLPWKL KQKNPKETRR KVYLCPEPTC VHHDPSRALG  240
DLTGIKKHYC RKHGEKKWKC DKCNKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRLVGRQ  300
GSCCYLCASA LLVLGLPSLR LSSRPWQSRL FLCERRPDGM PHACLQVQLY SFHGVVFVVS  360
LQYCHTTLVP CSSMQQPEML PVALLLRDSF ITHRAFCDAL AQESARLPPI GAGMYGSGGM  420
ALGLSGMAAS QLQSAFQDHA HSSGATAMGA NAAGQFELLM PSSAGTQAFR GAHPTSSSAS  480
PFYLGGGEDG HQGQAGHTSL LNGKPAFHGL MQLPEQHQQA NNGLLNLGFF SGATSGQQDA  540
RLVFLDQFNG SAAGNGRGDG GEHGNSSAGH ESGAIFSGNL MGNQMAAGAG FSSSLYNNSS  600
ETVAPPQMSA TALLQKAAQM GATTSGGGGG SVNSLLRGLG SGGALNGKPA GAAGFMAGES  660
SSSRSTSQAE NESQFRDMMN SLAASGNGAF SSGFPGVDDG KLSTRDFLGV GGRNMNGAAR  720
LQLRHGAAGI GMGSLDPEMK CRLSVGMVRY SGVEDAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-21254295344Zinc finger protein JACKDAW
5b3h_F2e-21254295344Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241804.21e-157uncharacterized protein LOC542697
TrEMBLA0A3L6PM371e-164A0A3L6PM37_PANMI; INDETERMINATE-related protein 1
STRINGPavir.Fb02381.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320