PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00524.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 859aa    MW: 92009.2 Da    PI: 10.1562
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00524.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.6e-354925852103
                                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 
                                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF
  Zmw_sc00524.1.g00170.1.am.mk 492 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEF 563
                                   9********************6667*****************************************999.........*** PP

                                   EESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  82 khksFkkgkkellekikrkkse 103
                                   +++ F+kg+k+ll++i+r+k++
  Zmw_sc00524.1.g00170.1.am.mk 564 ANEFFRKGDKQLLCEIHRRKTS 585
                                   *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-36482577IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-58488582IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-30489582IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-30492582IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18492515IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18531543IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340532556IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18544556IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MQPPCGAVDH PPSPVTGNSP CRSSPGPWAV YSEGGGRQQR PQAQHSKRTR RGAFEEGRGP  60
CTRSDRQMQS HYSSSVLAKP ASDAMHLRVS CRPDGRDASG RVPTKERRRR FRWWDSAGQP  120
VVIVLSLPIT GAAGQREVPD VAMLIIPSQA LLMHTVSPLS VRCCMQRHRP GCKRAGRGRR  180
YYQYVVNRRH SPPDRFRNPA AKGTPLQRCR IPHEGGPGGR SQAITPGPAA SALTVTATPD  240
RPATIRDRSC KFVIGTTGRR ASAAAQCPVI SGQRASEEGT ARHVEAESDD ARCPGAESGI  300
DGPAAAAPRA VDRAPGPSSP QFRTGQAGAC WPKPYPLQSR YEYKGQFPGP AAPSTARDVH  360
RSGHMERCSD PKKRCNTVPA CPPGTFAVLH GDTGGARAGK MSDLIDPCTE ADRQSDTYSL  420
PPPPPPARSP GLGHTPHLPS GVTSSDSLRH RPAPVENGGK DRERMERVER CGSWECDAAA  480
RSAAQKAVPA PFLTKTYQLV DDPATDHIVS WGDDRVSTFV VWRPPEFARD ILPNYFKHNN  540
FSSFVRQLNT YGFRKVVPER WEFANEFFRK GDKQLLCEIH RRKTSSASTA SPSPPPFFAP  600
PHFPLFHPGV QHHHHQFVGD DGVVAAHGVG VGFPHPHWRE QHAATRLLAL GAPATSPSSA  660
TDGGNGRAAT AAHAATRLLA LGAPATSPSS ATDGGNGRAA TAAVLMEENE RLRRSNTALL  720
QELAHMRKLY NDIIYFVQNH VRPVAPSPAA AAFLQGLGLQ ARNKPVGTAL NNSGGSTTSS  780
SSLTIAEEPS PPPQQLLDKE SGSSAPTKLF GVQLIAAPGG AGTKRPPSPD EDQPPSSPAT  840
KPRLVLESAD LSLSPASTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2148358512123Heat shock factor protein 1
5hdg_A3e-214885847112Heat shock factor protein 1
5hdn_A3e-214885847112Heat shock factor protein 1
5hdn_B3e-214885847112Heat shock factor protein 1
5hdn_C3e-214885847112Heat shock factor protein 1
5hdn_D3e-214885847112Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110ERRRRF
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394