PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00524.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 323aa MW: 35064.4 Da PI: 8.7469

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00524.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.6	1.6e-32	30	122	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl+k+++++e+++++e++sw e+g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv ++ we Zmw_sc00524.1.g00060.1.sm.mkhc 30 FLTKTHQMVEERATDEVVSWAEQGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WE 99 9***************************************************************99......... PP EEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkkse 103 F++++F++g++ l++ i+r+ks+ Zmw_sc00524.1.g00060.1.sm.mkhc 100 FANENFRRGEQGLMSGIRRRKST 122 ********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.18E-31	26	119	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-53	26	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.6E-35	26	119	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.1E-28	30	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-17	30	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-17	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	69	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-17	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAGAVAAAGQ PPKGGGRGGG GGGGGGPAPF LTKTHQMVEE RATDEVVSWA EQGRSFVVWK 60 PVEFARDLLP LHFKHCNFSS FVRQLNTYGF RKVVPDRWEF ANENFRRGEQ GLMSGIRRRK 120 STTPQSAKSG GCAVNVAFSP PLPPLPPTTS GGNDRSSSST SSPPRADLTS ENEQLKKDNH 180 TLAAELAQAR RHCEGLLGFL SRFLDVRQLD LGLLMQEDMR AAGDRQQCRA VADQDCSDEE 240 KSVKLFGVLL KDAATKRARC QEAAASERPI KMIRVCEPGF GVPSSGPGQY GGRDIARKTA 300 RLYACAYEYV HVQVMEDDHN SQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	3e-20	30	123	5	109	Heat shock factor protein 2
5d8l_B	3e-20	30	123	5	109	Heat shock factor protein 2
5d8l_D	3e-20	30	123	5	109	Heat shock factor protein 2
5d8l_F	3e-20	30	123	5	109	Heat shock factor protein 2
5d8l_H	3e-20	30	123	5	109	Heat shock factor protein 2
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	22	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802216.1	1e-139	heat stress transcription factor B-1-like isoform X1
Swissprot	Q67TP9	1e-126	HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBL	A0A1E5VP74	1e-146	A0A1E5VP74_9POAL; Heat stress transcription factor B-1
STRING	Pavir.Bb02269.1.p	1e-146	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Grand X, et al. Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns. Plant Biotechnol. J., 2012. 10(7): p. 840-50 [PMID:22607456]