PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00521.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 177aa MW: 20307.6 Da PI: 9.6688 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.7 | 5.6e-15 | 38 | 114 | 13 | 90 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +++ l ++a++ g++ +++ ++++ + + W+ ++ + +sgr +l++GW +Fv++ngL++gD+++F+l+++ +++ Zmw_sc00521.1.g00070.1.sm.mk 38 NHLKELGSRYARTVGLPARRG-QVVVLQYMRKIWKTEM-MIHHSGRQFLGGGWLRFVHDNGLRVGDICLFELKNErKNG 114 555667788999999997776.88888999********.677888889***********************99765665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.71E-14 | 22 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.89E-14 | 23 | 110 | No hit | No description |
SMART | SM01019 | 6.6E-5 | 31 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-14 | 33 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-12 | 38 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.193 | 59 | 124 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MKSCKCCERD LNHLDAKNQN MTCFLRLMTG NIKCNTENHL KELGSRYART VGLPARRGQV 60 VVLQYMRKIW KTEMMIHHSG RQFLGGGWLR FVHDNGLRVG DICLFELKNE RKNGPPRPSP 120 LSELRNHSHQ DGPLPCVRYA DVIMTNIVAR LAVSDALDKH WVLPTSVSLE KCRPMDQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685567.1 | 4e-19 | B3 domain-containing protein Os03g0619600-like | ||||
Refseq | XP_025797617.1 | 2e-18 | B3 domain-containing protein Os03g0619800-like isoform X1 | ||||
Refseq | XP_025797619.1 | 2e-18 | B3 domain-containing protein Os03g0619800-like isoform X2 | ||||
Refseq | XP_025797620.1 | 2e-18 | B3 domain-containing protein Os03g0619800-like isoform X3 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |