PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00508.1.g00220.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 154aa    MW: 17158.6 Da    PI: 8.4464
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00508.1.g00220.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-184598356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Zmw_sc00508.1.g00220.1.sm.mk 45 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 98
                                  4568999**********************************************9 PP
2HD-ZIP_I/II128.33.1e-4144133190
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da++++n++L 
  Zmw_sc00508.1.g00220.1.sm.mk  44 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVQADNDALL 124
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLree 90 
                                   +++++L++e
  Zmw_sc00508.1.g00220.1.sm.mk 125 SQNKKLQAE 133
                                   ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-1927101IPR009057Homeodomain-like
SuperFamilySSF466893.64E-2034102IPR009057Homeodomain-like
PROSITE profilePS5007117.34640100IPR001356Homeobox domain
SMARTSM003891.3E-1743104IPR001356Homeobox domain
PfamPF000468.1E-164598IPR001356Homeobox domain
CDDcd000861.38E-1545101No hitNo description
PRINTSPR000314.9E-67180IPR000047Helix-turn-helix motif
PROSITE patternPS0002707598IPR017970Homeobox, conserved site
PRINTSPR000314.9E-68096IPR000047Helix-turn-helix motif
PfamPF021831.8E-10100133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAPMLGKRPM YGADVGGGDE VNGCGGGGGA NEDELSDDGS QAGEKKRRLN VEQVRTLEKN  60
FELGNKLEPE RKLQLARALG LQPRQVAIWF QNRRARWKTK QLEKDYDALK RQLDAVQADN  120
DALLSQNKKL QAEYLLMIRM ALAVDLLELF SSVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465782.13e-80homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-65HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3L6SDB56e-79A0A3L6SDB5_PANMI; Uncharacterized protein
TrEMBLC5WVY27e-79C5WVY2_SORBI; Uncharacterized protein
STRINGPavir.Ia04323.1.p7e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894