PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00505.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HSF | ||||||||
Protein Properties | Length: 105aa MW: 11985.6 Da PI: 6.5044 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 79.8 | 4.2e-25 | 24 | 83 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y Zmw_sc00505.1.g00140.1.am.mk 24 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTY 83 9********************6667**********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.9E-26 | 15 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.2E-23 | 20 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.18E-21 | 23 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.5E-20 | 24 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-15 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-15 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-15 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MERVERCGNW ECDAGAQKAV PAPFLTKTYQ LVDDPATDHI VSWGDDRVST FVVWRPPEFA 60 RDILPNYFKH NNFSSFVRQL NTYVSVAFGL LLPSYVLLRG VFISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-15 | 14 | 83 | 20 | 87 | Heat shock factor protein 1 |
5d5v_B | 7e-15 | 14 | 83 | 20 | 87 | Heat shock factor protein 1 |
5d5v_D | 7e-15 | 14 | 83 | 20 | 87 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957003.1 | 2e-43 | heat stress transcription factor B-4c | ||||
Swissprot | Q67U94 | 1e-40 | HFB4C_ORYSJ; Heat stress transcription factor B-4c | ||||
TrEMBL | A0A0E0B3T9 | 4e-43 | A0A0E0B3T9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A453KZB5 | 6e-44 | A0A453KZB5_AEGTS; Uncharacterized protein | ||||
STRING | OGLUM09G13090.1 | 7e-44 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |