PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00502.1.g00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 472aa    MW: 51392.7 Da    PI: 9.3221
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00502.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.65.7e-2935147199
                                   EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                   f+kv tpsdv+k++rlv+pk++ae++             +++ ++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fv
  Zmw_sc00502.1.g00170.1.am.mk  35 FEKVVTPSDVGKLNRLVIPKQHAERYfpalgpatsaaaASSEGKGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFV 115
                                   99******************************99999977778999*********************************** PP

                                   HHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
                            B3  70 kangLkegDfvvFkld.gr.sefelvvkvfrk 99 
                                   k+++L +gD v F +  g+  ++++++ ++r+
  Zmw_sc00502.1.g00170.1.am.mk 116 KEKRLGAGDAVEFARGvGDaARGRFFIDFRRR 147
                                   *************9655888999999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-3730148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-2832131IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-2533128No hitNo description
SMARTSM010191.3E-2035148IPR003340B3 DNA binding domain
PROSITE profilePS5086313.9335148IPR003340B3 DNA binding domain
PfamPF023624.5E-2735147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEFGRIAAVQ EDPERARGSG GGGGGVVWVE REHMFEKVVT PSDVGKLNRL VIPKQHAERY  60
FPALGPATSA AAASSEGKGL VLSFEDRAGK AWRFRYSYWN SSQSYVMTKG WSRFVKEKRL  120
GAGDAVEFAR GVGDAARGRF FIDFRRRRQD VSFLQPPALQ RLPLPSVPIC PWQDYGTYAP  180
APAPNRQVLF LRPQMPAAVV LASVPARVAA STVEATRSKR LRLFGVNLDT PPVEDDSRVA  240
GTTSTLLQLP SPSSSTSSTT AGKDICSLDL GLGCHGARCG WRRASCDTRP GAVEPSDQCF  300
FPEVDETSPS YLFFSDKITG DAARGRGRSR ASTRKSTPAS TSGVPRHPWN LKVNIVSTPL  360
MRSLAPWSFR PAGSTHSSMH AAASQTWQAI AGSHTLTANT HLSPVMALKR PDHHGEQDSC  420
HRHVGPADLL SYMSENTRVQ SRASEDSVET KLGAVAEPDA DPCDVYHYSY YE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-51301473113B3 domain-containing transcription factor NGA1
5os9_B2e-51301473113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983810.11e-119putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN82e-96Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A1E5V5B21e-121A0A1E5V5B2_9POAL; Putative B3 domain-containing protein
STRINGSi039972m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]