PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00501.1.g00320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 429aa MW: 45808.2 Da PI: 6.5093 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 116 | 160 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l d v+q+G W+ Ia++++ gR +kqc++rw ++l Zmw_sc00501.1.g00320.1.am.mk 116 SWTAEEDSILRDMVEQYGETKWSVIAHHLP-GRIGKQCRERWINHL 160 7*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.7e-16 | 169 | 209 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd+ l+da+k +G++ W+ Ia++++ g +++ +k++w+ Zmw_sc00501.1.g00320.1.am.mk 169 VWTEEEDKMLIDAHKYHGNH-WAIIAKYLP-GHSENAVKNHWN 209 7*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.428 | 109 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-30 | 113 | 208 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-17 | 113 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 114 | 162 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-16 | 115 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.02E-17 | 116 | 160 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 163 | 213 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.179 | 165 | 216 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-13 | 166 | 214 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-15 | 169 | 209 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.28E-12 | 170 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MAARNFVPVD EEQAPPVLAG WIYLGSSYHG GAHFQNGLVP AFVHAGADRS TGVPVDMSSL 60 VASIGFAPVG FEMPEGGLAA TSFGASDVVP APPQGAMNLQ PQIGSNIKPP GPLKASWTAE 120 EDSILRDMVE QYGETKWSVI AHHLPGRIGK QCRERWINHL HPDIKQNDVW TEEEDKMLID 180 AHKYHGNHWA IIAKYLPGHS ENAVKNHWNA TLRSLKAKRP MKKKKSEQVP KGQFSILEEY 240 IRSQYPEDAS IRAAPAPPSP APPHHLAYGS GLPPPAADAP AAFPNNTGMS FHGDNSAPGS 300 SNRGMINLNM PPMLPDLNTI SEPQDYQLNY ATVYVPVPPA PATQLQLAPA QDSLQVSSSL 360 NLSPYADYFA FLGGDPGRHH HAGVSSGNPG GSGYYNEAGQ GRAGGAGGNT GDGKELASSS 420 REFSPPFSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-40 | 113 | 213 | 3 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 3e-40 | 113 | 213 | 3 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972257.1 | 1e-108 | transcription factor MYB80 | ||||
TrEMBL | K3XS58 | 1e-107 | K3XS58_SETIT; Uncharacterized protein | ||||
STRING | Si004755m | 1e-107 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |