PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00496.1.g00490.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 404aa MW: 44826.7 Da PI: 4.322

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00496.1.g00490.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144	8.2e-45	10	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknrat 78 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp+ ++++++++w+fFs+ d+ky++g+r++r+t Zmw_sc00496.1.g00490.1.am.mkhc 10 PPGFRFSPTDEELVLYFLKRRISSGRPTP--YIADVDVYKFHPSHLPErsALQTGDRQWFFFSRLDRKYPNGSRASRTT 86 8*******************9999555..6**********94357888999****************** PP NAM 79 ksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatg+d+ v+s +g+ vg kktLv+++grap+ge+tdWvm ey++ Zmw_sc00496.1.g00490.1.am.mkhc 87 GDGYWKATGRDRFVCSGgsGGRSVGNKKTLVYHHGRAPRGERTDWVMYEYTI 138 ***********98778889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-51	7	161	IPR003441	NAC domain
PROSITE profile	PS51005	51.195	9	161	IPR003441	NAC domain
Pfam	PF02365	5.0E-23	10	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MENSPPRRWP PGFRFSPTDE ELVLYFLKRR ISSGRPTPYI ADVDVYKFHP SHLPERSALQ 60 TGDRQWFFFS RLDRKYPNGS RASRTTGDGY WKATGRDRFV CSGGSGGRSV GNKKTLVYHH 120 GRAPRGERTD WVMYEYTILA DALPQAAGAR EAYALYKLFQ KSGVGPKNGE QYGAPFREED 180 WLDDDEEQDL PAGAVVHPVA TRPTTTNCAA TVEQQAEREL VGDLEELLSE FGNDQEQAEA 240 QLEFSNSVSS QSQLQHADGQ GCRSDCASKA QVVDASTGND ALPVADNTCT DLPLGDIEEL 300 LMRISDDQQN TEFFSDFSTS LPELQLQCDE YQAWLDSNKG ERIGAKDPTA SSGAVMTAEC 360 TSTELPVGDL EGLLLQIAND QEMVEPLLAL EIYVMVIQLV LFLV

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MENSPPRRWP PGFRFSPTDE ELVLYFLKRR ISSGRPTPYI ADVDVYKFHP SHLPERSALQ  60
TGDRQWFFFS RLDRKYPNGS RASRTTGDGY WKATGRDRFV CSGGSGGRSV GNKKTLVYHH  120
GRAPRGERTD WVMYEYTILA DALPQAAGAR EAYALYKLFQ KSGVGPKNGE QYGAPFREED  180
WLDDDEEQDL PAGAVVHPVA TRPTTTNCAA TVEQQAEREL VGDLEELLSE FGNDQEQAEA  240
QLEFSNSVSS QSQLQHADGQ GCRSDCASKA QVVDASTGND ALPVADNTCT DLPLGDIEEL  300
LMRISDDQQN TEFFSDFSTS LPELQLQCDE YQAWLDSNKG ERIGAKDPTA SSGAVMTAEC  360
TSTELPVGDL EGLLLQIAND QEMVEPLLAL EIYVMVIQLV LFLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-41	10	138	16	140	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310063.1	0.0	NAC domain-containing protein 82 isoform X1
TrEMBL	A0A1E5UTD4	0.0	A0A1E5UTD4_9POAL; NAC domain-containing protein 16
STRING	Pavir.J04800.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9128	28	40