PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00495.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 97aa MW: 10930.5 Da PI: 9.1212

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00495.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35	3.3e-11	10	57	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT++ d+l+ +a + + ++ +W+ Iar +g g+t ++ksr+q + Zmw_sc00495.1.g00220.1.sm.mk 10 QWTKQQDKLFEQALAVYDKEtpdRWHNIARAVGGGKTVDEVKSRFQLL 57 7***************99***********************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.224	3	58	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.4E-4	5	56	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-9	7	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.17E-13	9	66	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-8	10	56	IPR001005	SANT/Myb domain
CDD	cd00167	1.53E-7	11	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MASMSMRSSQ WTKQQDKLFE QALAVYDKET PDRWHNIARA VGGGKTVDEV KSRFQLLVHD 60 VGRIENGEVA FPAYRCPGVG STAMAGYETD RMKHLKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-23	1	97	1	92	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154612.1	1e-43	protein RADIALIS-like 3
Refseq	XP_020154876.1	1e-43	protein RADIALIS-like 3
Swissprot	Q1A173	5e-30	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A453A097	2e-42	A0A453A097_AEGTS; Uncharacterized protein
TrEMBL	N1QTK1	2e-42	N1QTK1_AEGTA; DnaJ homolog subfamily C member 2
STRING	EMT00143	4e-43	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230