PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00486.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 560aa    MW: 59577.1 Da    PI: 9.0392
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00486.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.11.9e-30389445158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   d+p+YVN+KQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  Zmw_sc00486.1.g00020.1.am.mk 389 DAPIYVNPKQYEGILRRRRARAKAERENRL-VKGRKPYLHESRHLHAMRRARGSGGRF 445
                                   68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575122No hitNo description
SMARTSM005212.6E-34387448IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.186388448IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-27391445IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-22391413IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-22422445IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MALFHHRILR PLLQTLAAGT SCLLLLPFST PLASIPPPRL SMALDDDERA ELNRLRAVEA  60
ERLKRAEETA AALAQEEAER MPPHALHVGQ QFGTPPTPGY GALPSCGVPD FIPSPTGYGA  120
PGLGALGPNT PPQQAAESST SGAPATHALG SVDADLVSSG SGALSGDFPA PSPGTAQQWP  180
VAPRAMACSH HVVPPSPARQ GPRHETVRST TGPCESQLPL TSLRSCVAPS SLALLARLEI  240
PFKARRGKAT MMSFKNHQGF AALNQASHGS GAPLPWWAGP QLLYGEPAPL SPEETRREGQ  300
FEVVPGAQSS PDPAPPSAKR AAAPEVLKFS VFQSQGDPEA GGKGDKAPDH STIIALQSPF  360
PEYNGRFEIG MGQSMSGGRM LLPLHAPADA PIYVNPKQYE GILRRRRARA KAERENRLVK  420
GRKPYLHESR HLHAMRRARG SGGRFLNTKK AGQGKETSAK EGNKAAPNAR PGSFSPRLEQ  480
GNNQHSCHSR SSVSSGLSGS EASSVYEHDD TDHYNSSIEH LRTPFFTPQP SIMDGEHGAA  540
TIPSFKWATG YGCCEQLLRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-16389446260HAPB protein
4g92_A1e-16389446260HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677584.11e-112nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_020407730.11e-112nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_025796559.11e-112nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.11e-112nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.11e-112nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0A9RWX31e-126A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGPavir.Ia01146.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790