PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00480.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 447aa MW: 48860.4 Da PI: 9.7178

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00480.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.2	1.9e-05	376	399	31	54
HHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRak 54 LA++ gLt++qV+ WF N R + Zmw_sc00480.1.g00170.1.am.mk 376 DTLAARSGLTQTQVSCWFINARVR 399 579*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01489	2.6E-34	218	379	IPR006384	Pyridoxal phosphate phosphatase-related
SuperFamily	SSF56784	2.42E-18	218	350	IPR023214	HAD-like domain
Gene3D	G3DSA:3.40.50.1000	8.7E-8	219	334	IPR023214	HAD-like domain
TIGRFAMs	TIGR01488	2.0E-15	219	375	IPR006383	HAD-superfamily hydrolase, subfamily IB, PSPase-like
Pfam	PF06888	3.1E-53	219	380	IPR016965	Phosphatase PHOSPHO-type
SuperFamily	SSF46689	4.28E-7	374	410	IPR009057	Homeodomain-like
CDD	cd00086	2.83E-5	375	403	No hit	No description
Pfam	PF05920	2.5E-7	375	399	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	8.616	375	403	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-9	375	404	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0016791	Molecular Function	phosphatase activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MLKQLEQTMA PGTRLILHRP WIGCAMQHLV SPQFRRPVEM RLQSQANRSA PLHLGLTRLP 60 GRSTTWATWA QVLPNRSKPQ VAQPPRDPRA TPFPRYLPSV VFYTVRPGIF PGTISIDPSL 120 LRELIPTFGT SSLTIRVVRG AQGKREPCNG RDNADAISAH QPTVPSVSVP NVPLRGLSLA 180 GRVSWPSCVM TERSHGPWPC CPGSRTATMA VSKSNGAPLV VFDFDKTIVD CDSDNWVVDA 240 LGATERFDEL LRQLPWNYAI VSTDAMMGEL HSQGKTPEDI KATLRTAPLS AHVVAAIKSA 300 HALGCELRIL SDANAFFIDT ILAHHGLAGY FSGVDTNPGY VDAAGRLRIR PYHEFHASAT 360 GHGCELPTCP PNMCKDTLAA RSGLTQTQVS CWFINARVRI WKPVLPAACR FASAMQARRL 420 CYAVLCPSPN GVRPSTLSVV TTRVLFL

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MLKQLEQTMA PGTRLILHRP WIGCAMQHLV SPQFRRPVEM RLQSQANRSA PLHLGLTRLP  60
GRSTTWATWA QVLPNRSKPQ VAQPPRDPRA TPFPRYLPSV VFYTVRPGIF PGTISIDPSL  120
LRELIPTFGT SSLTIRVVRG AQGKREPCNG RDNADAISAH QPTVPSVSVP NVPLRGLSLA  180
GRVSWPSCVM TERSHGPWPC CPGSRTATMA VSKSNGAPLV VFDFDKTIVD CDSDNWVVDA  240
LGATERFDEL LRQLPWNYAI VSTDAMMGEL HSQGKTPEDI KATLRTAPLS AHVVAAIKSA  300
HALGCELRIL SDANAFFIDT ILAHHGLAGY FSGVDTNPGY VDAAGRLRIR PYHEFHASAT  360
GHGCELPTCP PNMCKDTLAA RSGLTQTQVS CWFINARVRI WKPVLPAACR FASAMQARRL  420
CYAVLCPSPN GVRPSTLSVV TTRVLFL