PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00471.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 320aa MW: 36057.3 Da PI: 7.889

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00471.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.7	5.7e-33	50	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatg 71 +p+G++F+P+d+el+ ++L+ v++ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y++g Zmw_sc00471.1.g00160.1.sm.mkhc 50 MPAGVKFDPSDQELI-HHLRTMVDDGGsrahplIDEFIPtIQGDdGICYTHPENLP-GVRKDGLSKHFFHRPSKAYTNG 126 699**********.99*99986665443332333665546******.666677799********* PP NAM 72 krknra............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +rk+r+ +++ +W++tgk++++++ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l Zmw_sc00471.1.g00160.1.sm.mkhc 127 TRKRRKiharrdlnssdnAAEMRWHKTGKTRPLIV-EGRQEGCKKILVLYanFGKRRKPEKTNWVMHQYHL 196 *879999999988877899********.9999******6547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-35	43	214	IPR003441	NAC domain
PROSITE profile	PS51005	30.993	50	214	IPR003441	NAC domain
Pfam	PF02365	1.4E-14	51	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MNRELPIPTI SSSCGLEITA GKFEHRRVST LRSCPSCGHA IDCNTDMVGM PAGVKFDPSD 60 QELIHHLRTM VDDGGSRAHP LIDEFIPTIQ GDDGICYTHP ENLPGVRKDG LSKHFFHRPS 120 KAYTNGTRKR RKIHARRDLN SSDNAAEMRW HKTGKTRPLI VEGRQEGCKK ILVLYANFGK 180 RRKPEKTNWV MHQYHLGDQE EKDGELVVSK VFYQTQTRQH VATAAPAMVA TAEQDSMKGE 240 EAAETSEETQ DELSGCAAAS TTSMVVMMQQ RQQRRTNRDD GQLRVADSRK RDHEVGLGDQ 300 ETSHKQEQND NRNIASQQQL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960907.1	1e-123	NAC domain-containing protein 73
Refseq	XP_025808650.1	1e-123	NAC domain-containing protein 10-like isoform X2
Swissprot	Q9M0F8	2e-97	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1E5W3H8	1e-129	A0A1E5W3H8_9POAL; NAC domain-containing protein 73
STRING	Si024889m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]