PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00471.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 42310.3 Da PI: 6.9144 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.6 | 5e-09 | 111 | 132 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd+C FaHg Zmw_sc00471.1.g00060.1.am.mk 111 AACPDFRK-GGCKRGDNCEFAHG 132 78******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.81E-5 | 106 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-6 | 107 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 108 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-7 | 111 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 113 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 142 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 395 aa Download sequence Send to blast |
MMMMGEGAAH APPWQHGPAS GGVEGDDAYT LLAALRRYLP SNDSAERDED GEEEAAVAAL 60 DAYACDEFRM YEFKVRRCAR GRSHDWTDCP FAHPGEKARR RDPRRYHYSG AACPDFRKGG 120 CKRGDNCEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRV LPAQQQQQTA 180 SPRGVPAAAA AGPLAESYDG SPLRRQAFES YLTKSMMSSS PTSTLVSPPR SPPSESPPVS 240 PDAAAALRRG SWPGIGSPVN DVVASLRQLR LASSSPRLAP SGASFLAGYP SGAFGSPKST 300 GLYSLPSTPT GPSPVTITTP SGATVMTIDR LNLGLLEEAE PVMERVESGR ALREKVFERL 360 SKEATVPNDT TAVATADGAP AGSAPDVAWV TDLVD |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960911.1 | 0.0 | zinc finger CCCH domain-containing protein 35 | ||||
Swissprot | Q6L4N4 | 1e-177 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | A0A0A9E0J0 | 0.0 | A0A0A9E0J0_ARUDO; Uncharacterized protein | ||||
STRING | Si024826m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Publications ? help Back to Top | |||
---|---|---|---|
|