PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00467.1.g00540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 137aa MW: 14905.8 Da PI: 10.7602 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.7 | 1.2e-16 | 49 | 83 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kT +WR gp g+ktLCnaCG++y++ +l Zmw_sc00467.1.g00540.1.am.mk 49 CPHCASEKTQQWRTGPLGPKTLCNACGVRYKSGRL 83 9******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.3E-14 | 43 | 93 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.106 | 47 | 79 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-14 | 47 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.6E-12 | 47 | 81 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.58E-10 | 48 | 95 | No hit | No description |
Pfam | PF00320 | 1.1E-14 | 49 | 83 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 49 | 74 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MPPAPSPSSI NHQAWQRSKN KQNLPAAPAA GGGGDDPNSR SENGGVRRCP HCASEKTQQW 60 RTGPLGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKELIHLR 120 GTSSSASSSP FRDYGLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574323.1 | 6e-49 | GATA transcription factor 2 | ||||
Swissprot | O49741 | 5e-45 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A287Q1I0 | 1e-48 | A0A287Q1I0_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A3B6KUH9 | 3e-48 | A0A3B6KUH9_WHEAT; GATA transcription factor | ||||
TrEMBL | A0A446TQN8 | 2e-48 | A0A446TQN8_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446TQQ5 | 3e-48 | A0A446TQQ5_TRITD; GATA transcription factor | ||||
STRING | BRADI3G33200.1 | 2e-48 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Publications ? help Back to Top | |||
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