PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00458.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 598aa MW: 64045.1 Da PI: 6.8243 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.5e-16 | 368 | 414 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Zmw_sc00458.1.g00170.1.sm.mkhc 368 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 414 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.48E-17 | 361 | 418 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-20 | 362 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 364 | 413 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-13 | 368 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-20 | 368 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 370 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MVYSADACVC PPVHGCRSDG NDFAELLWEN GQAVVHGRRK QPLTAFPPFT CGGASSSKAQ 60 EKRPGSDPVA LLKTTGVYGA GTMAPSAHDL YSGLDTSRGN GDLDDTVPWI HYPIIEDDDE 120 GAAPALADSY SPDFFSELQA AAAVAVNLTP PPPSVQHTAD NRGGSRPEPQ AEFKANKQPP 180 LGGGGDALMN FSLFSRPAAM ARASLQQSAQ RPPPPLGTDK PPSVTVTSST RVESTVVQSS 240 SGPRTAPVHT DQRMAWPQAK EVRFACTAAP TSMAAGIMQQ ELPRDRIANN MAPQRRVEAK 300 KVPEAAIAAS SVCSGNGAGI GNDESWRQQK RKSQAECSAS QDDDLEDESG GLRRSGIRST 360 KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQMM 420 SMGSGLCIPP MLLPPTMQHL QIPTMAHFPH LGVGLGYGMG IFDMNSTTTV PLPPMPGAHF 480 PCQMIPGTAP HGIGIPVRNT LPMFGLPGQP IHPSVPGVQP FPSLASLPVR PNLAPQVSAT 540 VANMVQEQQQ VSNQQQHSLN DEGTQGASTR DPQIQTVLQV DNQHFSVPST TQSQSSHF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 372 | 377 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967640.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_004967641.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_004967642.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_004967643.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_004967644.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_022682497.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_025817917.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | A0A3L6R267 | 0.0 | A0A3L6R267_PANMI; Transcription factor APG-like isoform X1 | ||||
STRING | Si000700m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Publications ? help Back to Top | |||
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