PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00458.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 262aa MW: 29610.7 Da PI: 7.7942 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.5 | 1.5e-12 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kRrn ++KK +EL C+++v++++++ Zmw_sc00458.1.g00110.1.am.mk 11 IANNSTRKSTFNKRRNALIKKVSELRAFCGVKVSLVVYGD 50 899***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.82 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-11 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.24E-18 | 3 | 89 | No hit | No description |
SuperFamily | SSF55455 | 3.79E-17 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-13 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MPRRKVNLQW IANNSTRKST FNKRRNALIK KVSELRAFCG VKVSLVVYGD EVDKTKPPVV 60 YPSVPEARQL LSSFKAMPDH LENWKKVTNM EEYLRGRISK LQDQKRKNAR EKQEETTLHN 120 LHKAMDGNRS AVLAGLKPEE LIKLDWLVQS KIMSVKEHFQ QFGIEPGPFQ EPLLPPPLEQ 180 PTLSTHEMQN LASVEESQPQ QHDLLAALAW NEEEIGSVVY SDLGVSNNGG AGPSNSSGGT 240 MDHYNMEGLG LPWSRDPFPN ME |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |