PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00457.1.g00320.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 716aa    MW: 78295.4 Da    PI: 8.6928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00457.1.g00320.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.3e-10271330158
                                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr 58 
                                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W ++++++ + ++
  Zmw_sc00457.1.g00320.1.sm.mkhc 271 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDVTGKEWMFQFRFWPNNNS 330
                                     89**************************555566778***************99766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-18263331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-13268330IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-14269332No hitNo description
SMARTSM010190.0036271348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MAPPSPVWSP SMHVPQNVAD RKENPVKSWR PPAGQISSQW RQTSMWSVSS VQSDLQQRLA  60
YEFDRPSGSE KLLPGRTFIH GSERKFDEMH ERPTTPASMN QLLRDRDANG HGQPTNLDPA  120
YYALYHREGP HPSSVNDPGH HGGENESFSA RRVGISDPST GLDAGFKLDS HHPSDQPSLS  180
VGLPSNFAST NGPKEHIRIA SSQPQASSSL QKQFYAHPVS GYNEFQAQMR NGRPRMDAKA  240
RSQLLPRYWP RITDQELQHL SGDSHSVTPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI  300
SQPEGLPLKV QDVTGKEWMF QFRFWPNNNS RIRLEPEGKL IMGFRKATNL STEQDQTSKP  360
TNGAPTSSEV NGKAPAPDSS PNAAATRQNK VKIESNSSSP VEQATASKID KGGPAQKEGQ  420
GTVQSSQVSV KRKATSVGQK IKRLRMDNEE SIELKITWEE AQELLRPPPK APSVVVVDGH  480
EFEEYEEPPI LGRKTHFATN QSGSSCEAAP EISMEDLAEL IPIKSGFGGA KKSKAKIEAD  540
TIDASDGLDT LANLAILGEG EALPSQPTTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC  600
NVCMTVRRRF RTLMLRREKR KDTGSPRKKE ASQTSETVLQ TGSGPPAIST SADSSPQKAD  660
TNADGPEDMA VDPKMTSSPV KNHIDLNSQP DRDDEQSPKA DAGAAGATRL LRDNLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-412503492126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1616628REKRKDTGSPRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699489.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLK3ZQF20.0K3ZQF2_SETIT; Uncharacterized protein
STRINGSi028829m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647