PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00457.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 496aa MW: 53173 Da PI: 8.5713 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 7.8e-19 | 14 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEde+lv ++k++G g +W++Ia++++ gRt++++k++w+++ Zmw_sc00457.1.g00070.1.am.mk 14 KGPWTAEEDEKLVAYIKKHGQGnwrtlpknaaslaslpprdttvvRWSAIAARLP-GRTDNEIKNYWNTH 82 79*****************************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 5 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.185 | 9 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-14 | 11 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-19 | 13 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-16 | 14 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-13 | 16 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MGRAPCCDKT GLKKGPWTAE EDEKLVAYIK KHGQGNWRTL PKNAASLASL PPRDTTVVRW 60 SAIAARLPGR TDNEIKNYWN THIRKRLLRM GIDPVTHAPR LDLLDLSGLL KPAAHAAPAY 120 YPTQADLDAL RALEPLASYP DLLRLASTLL SGTVQAPAVA DQQLLLPWLL HQAQMTQQAA 180 AMAPQEVVPM QADHQFMQPA ASNAPCQVPG LVHTNQTTIQ QTGAAQQQQL QDIPAASSYV 240 DSLLDMPALM QMVQQQQSDA SNMQQHWSST ATSSNNNVGG SGVSTPSSSP VTRLSNNNST 300 TSTTTTYGAT TTNDAATLFN MPLSDLLDTA AVPLVPHHGL VSGEEKQGAL RSERWTNVYA 360 AFARTQATQD TSCVSTDGDR TVTTSLTCRK GIDRTDQHWH ARRRPPTRPR GSTGAKLNLG 420 LKQVAPFDPQ THTTTTKATA GLLLPHATAT ACPLLTSAKA TATLSPLAKA TTTAGHILLD 480 ATGPCECLHA EMHSAR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 401 | 408 | RRRPPTRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802158.1 | 1e-106 | transcription factor MYB102-like | ||||
TrEMBL | A0A2S3H3C9 | 1e-105 | A0A2S3H3C9_9POAL; Uncharacterized protein | ||||
STRING | MLOC_62436.1 | 1e-103 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |