PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00446.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 367aa MW: 40561.5 Da PI: 6.5224

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00446.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.1	1.2e-14	151	194	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+teE+ +++++ + +G g+Wk Iar++ k+Rt+ q+ s+ qky Zmw_sc00446.1.g00060.1.am.mk 151 WSTEEHRQFLRGLRVYGRGDWKNIARHFVKTRTAVQVSSHAQKY 194 *******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.912	143	199	IPR017930	Myb domain
SuperFamily	SSF46689	3.01E-16	144	199	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-12	147	197	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-11	147	196	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-13	147	197	IPR006447	Myb domain, plants
CDD	cd00167	1.71E-10	151	194	No hit	No description
Pfam	PF00249	1.1E-10	151	194	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAMAAAADMG PLFTGDWSVS DDVATVKYLI VMHSNNAIIS DGVAGMLNSK HKNIVDILHK 60 QFPWNDRRQV TDLYFDVVVE MLQGPEMMAT GGIDLVNDNF GVMPLQLPVV EDPVMDNMDV 120 LLGPVNVVDT TRARRQPPRY PRAVRNKGRF WSTEEHRQFL RGLRVYGRGD WKNIARHFVK 180 TRTAVQVSSH AQKYYRRQES GAARQRYSIN DVGLYDAEPW AAPTNNSSGS WETLSFAGGN 240 YNNSNGYIAF GQQAPAQPAL AMNNPAPAMN NPALAMNNTA PAMNYPALAM NNPTSAMNNN 300 PAPVWSPFQY NAGEASTGQA AWTTGDQQMG YAAAAPPPAM EETRSFLSSG DQQGFFATQQ 360 WMNNMYY

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAMAAAADMG PLFTGDWSVS DDVATVKYLI VMHSNNAIIS DGVAGMLNSK HKNIVDILHK  60
QFPWNDRRQV TDLYFDVVVE MLQGPEMMAT GGIDLVNDNF GVMPLQLPVV EDPVMDNMDV  120
LLGPVNVVDT TRARRQPPRY PRAVRNKGRF WSTEEHRQFL RGLRVYGRGD WKNIARHFVK  180
TRTAVQVSSH AQKYYRRQES GAARQRYSIN DVGLYDAEPW AAPTNNSSGS WETLSFAGGN  240
YNNSNGYIAF GQQAPAQPAL AMNNPAPAMN NPALAMNNTA PAMNYPALAM NNPTSAMNNN  300
PAPVWSPFQY NAGEASTGQA AWTTGDQQMG YAAAAPPPAM EETRSFLSSG DQQGFFATQQ  360
WMNNMYY

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133