PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00444.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | S1Fa-like | ||||||||
Protein Properties | Length: 80aa MW: 8766.43 Da PI: 10.4802 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 136.1 | 8e-43 | 12 | 80 | 3 | 70 |
S1FA 3 vakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 v+++e kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe Zmw_sc00444.1.g00130.1.sm.mkhc 12 VVIEEGsKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80 4555545*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 5.0E-7 | 12 | 80 | No hit | No description |
Pfam | PF04689 | 9.9E-40 | 16 | 80 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 80 aa Download sequence Send to blast |
MAEQFADSAN NVVIEEGSKG LNPGMIVLLV VASFLLLFFV GNYALYVYAQ KTLPPKKKKP 60 VSKKKLKREK LKQGVSAPGE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633609.1 | 3e-31 | DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 2e-32 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A0D3FVJ5 | 6e-30 | A0A0D3FVJ5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZKE5 | 3e-30 | A0A0D9ZKE5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H0D2 | 3e-30 | A0A0E0H0D2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P8S3 | 3e-30 | A0A0E0P8S3_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM04G11330.1 | 4e-31 | (Oryza glumipatula) | ||||
STRING | ORUFI04G12840.1 | 4e-31 | (Oryza rufipogon) | ||||
STRING | ONIVA04G09610.1 | 4e-31 | (Oryza nivara) | ||||
STRING | OBART04G11650.1 | 9e-31 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Publications ? help Back to Top | |||
---|---|---|---|
|