PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00443.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MIKC_MADS

Protein Properties

Length: 196aa MW: 22068.3 Da PI: 7.548

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00443.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.7	5.6e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s Zmw_sc00443.1.g00060.1.sm.mk 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP
2	K-box	62.6	1.5e-21	60	114	34	88
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 qR+llGedL+sL +keL+qLe+qL++sl++iRs++++++l+q+ +lq+k l Zmw_sc00443.1.g00060.1.sm.mk 60 GQRNLLGEDLGSLGVKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRKIALLT 114 58************************************************87665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.193	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.0E-41	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.19E-30	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.41E-41	2	59	No hit	No description
PRINTS	PR00404	3.9E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-33	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	10.142	40	143	IPR002487	Transcription factor, K-box
Pfam	PF01486	2.2E-17	59	121	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSG 60 QRNLLGEDLG SLGVKELEQL EKQLDSSLRH IRSTRTQHML DQLTDLQRKI ALLTSFTTVL 120 CEEKLEETNQ VHGQVMWEHG ANLMGYERQS PQQAPPSHAG NGFFHPLVDG AAEPTLQIGY 180 ICAQDTASFI LFLAPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-19	1	59	1	59	MEF2C
5f28_B	2e-19	1	59	1	59	MEF2C
5f28_C	2e-19	1	59	1	59	MEF2C
5f28_D	2e-19	1	59	1	59	MEF2C
6byy_A	3e-19	1	59	1	59	MEF2 CHIMERA
6byy_B	3e-19	1	59	1	59	MEF2 CHIMERA
6byy_C	3e-19	1	59	1	59	MEF2 CHIMERA
6byy_D	3e-19	1	59	1	59	MEF2 CHIMERA
6bz1_A	2e-19	1	59	1	59	MEF2 CHIMERA
6bz1_B	2e-19	1	59	1	59	MEF2 CHIMERA
6bz1_C	2e-19	1	59	1	59	MEF2 CHIMERA
6bz1_D	2e-19	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|PubMed:9339904, ECO:0000269\|Ref.9}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105525.1	4e-93	MADS27
Swissprot	Q9SAR1	1e-92	MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBL	A0A1E5UI53	1e-100	A0A1E5UI53_9POAL; MADS-box transcription factor 8
STRING	BRADI4G34680.1	1e-92	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3483	34	69

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Jang YH, et al. Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY. Plant Cell Physiol., 2009. 50(8): p. 1479-92 [PMID:19561057] Cui R, et al. Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J., 2010. 61(5): p. 767-81 [PMID:20003164] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119]