PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00433.1.g00450.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 549aa MW: 60634.8 Da PI: 6.9771

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00433.1.g00450.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.4	3.8e-21	38	94	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ Zmw_sc00433.1.g00450.1.sm.mkhc 38 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 94 688999************************************************995 PP
2	START	156.6	2e-49	284	419	74	206
TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE- CS START 74 etlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRa 145 + + +a+tlev+s+g galq+m+ e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ + v ++ Zmw_sc00433.1.g00450.1.sm.mkhc 284 HIVSRAATLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPGS----VLKC 358 67899**************************************************************97....8* PP EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++pSg+li++++ng+skvtwvehv++++r++h +++ lv+sgla+ga++wv tl+rqce+ Zmw_sc00433.1.g00450.1.sm.mkhc 359 RRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHDIYKLLVNSGLAFGARRWVGTLDRQCER 419 ***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-23	21	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.52E-21	23	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.443	35	95	IPR001356	Homeobox domain
SMART	SM00389	2.6E-20	36	99	IPR001356	Homeobox domain
CDD	cd00086	1.11E-19	38	96	No hit	No description
Pfam	PF00046	9.7E-19	38	93	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	70	93	IPR017970	Homeobox, conserved site
Gene3D	G3DSA:1.10.10.60	3.7E-4	80	122	IPR009057	Homeodomain-like
SMART	SM00234	9.1E-38	206	419	IPR002913	START domain
PROSITE profile	PS50848	31.097	227	422	IPR002913	START domain
SuperFamily	SSF55961	6.44E-30	228	421	No hit	No description
CDD	cd08875	3.11E-99	231	418	No hit	No description
Pfam	PF01852	2.2E-41	284	419	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	8.2E-5	300	415	IPR023393	START-like domain
SuperFamily	SSF55961	8.24E-9	440	525	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MERERNHLLV HLPQSGSENA DGVSVDDLQD PSQPPNKKKR YHRHTQHQIQ ELEAFFKECP 60 HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKNQHERQE NSQLRAENEK LRAENMRYKE 120 ALSSASCPNC GGPAALGEMS FDEHHLRVEN ARLREEIDRI SAIAAKYVGK PMVSFPVMSS 180 PLAITRAGAS PLDLGVGAAY GAGAANIFGG VAAGAGAGEL LRGALHSDAD KPVIVELAVT 240 AMEELVRMAQ VDEPLWTPGL DGSAETLNEE EYARMFPQGL GPKHIVSRAA TLEVLSTGVA 300 GNYNGALQVM SVEFQVPSPL VPTRESYFVR YCKQNSDGTW AVVDVSLDSL RPGSVLKCRR 360 RPSGCLIQEM PNGYSKVTWV EHVEVDDRSV HDIYKLLVNS GLAFGARRWV GTLDRQCERL 420 ASVMASNIPT SDIGVITSTE GRKSMLKLAE RMVISFCGGV TASAAHQWTT LSGSGAEDVR 480 VMTRKSVDDP GRPPGIVLNA ATSFWLPVPP KRVFDFLRDE SSRSEASIRS PCMLMIECIH 540 PYIHAHTRY

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MERERNHLLV HLPQSGSENA DGVSVDDLQD PSQPPNKKKR YHRHTQHQIQ ELEAFFKECP  60
HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKNQHERQE NSQLRAENEK LRAENMRYKE  120
ALSSASCPNC GGPAALGEMS FDEHHLRVEN ARLREEIDRI SAIAAKYVGK PMVSFPVMSS  180
PLAITRAGAS PLDLGVGAAY GAGAANIFGG VAAGAGAGEL LRGALHSDAD KPVIVELAVT  240
AMEELVRMAQ VDEPLWTPGL DGSAETLNEE EYARMFPQGL GPKHIVSRAA TLEVLSTGVA  300
GNYNGALQVM SVEFQVPSPL VPTRESYFVR YCKQNSDGTW AVVDVSLDSL RPGSVLKCRR  360
RPSGCLIQEM PNGYSKVTWV EHVEVDDRSV HDIYKLLVNS GLAFGARRWV GTLDRQCERL  420
ASVMASNIPT SDIGVITSTE GRKSMLKLAE RMVISFCGGV TASAAHQWTT LSGSGAEDVR  480
VMTRKSVDDP GRPPGIVLNA ATSFWLPVPP KRVFDFLRDE SSRSEASIRS PCMLMIECIH  540
PYIHAHTRY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976894.1	0.0	homeobox-leucine zipper protein ROC2
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	K3Y5C1	0.0	K3Y5C1_SETIT; Uncharacterized protein
STRING	Si009409m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]