PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00430.1.g00390.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 264aa MW: 29252.8 Da PI: 9.1528

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00430.1.g00390.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.9e-18	96	150	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +++ +LA++l+L rqV vWFqNrRa+ k Zmw_sc00430.1.g00390.1.am.mk 96 RKKLRLSKEQSAFLEDSFKEHSTLTPNQKNDLARRLNLRPRQVEVWFQNRRARTK 150 678899***********************************************98 PP
2	HD-ZIP_I/II	115.8	2.5e-37	96	185	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlskeq+++LE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+ e+Lkr++ +l++en+rL+ Zmw_sc00430.1.g00390.1.am.mk 96 RKKLRLSKEQSAFLEDSFKEHSTLTPNQKNDLARRLNLRPRQVEVWFQNRRARTKLKQTEVHREYLKRWCATLTQENRRLQ 176 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreel 91 +ev+eLr +l Zmw_sc00430.1.g00390.1.am.mk 177 REVAELR-AL 185 ****9.44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-18	89	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	92	152	IPR001356	Homeobox domain
SMART	SM00389	1.9E-15	94	156	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-15	96	150	IPR001356	Homeobox domain
CDD	cd00086	8.74E-16	96	153	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-17	96	150	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	127	150	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.1E-6	152	185	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.1E-19	152	195	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MELKLRLGDS SAPAKATFAT VPTSAHASSR EDHELVLELG TGTAKRAEQD NQKTHLQLEE 60 DDEANSRSES PVEVPLHQAA DQEGAEDEEN GVGGVRKKLR LSKEQSAFLE DSFKEHSTLT 120 PNQKNDLARR LNLRPRQVEV WFQNRRARTK LKQTEVHREY LKRWCATLTQ ENRRLQREVA 180 ELRALRTTYP IYYGQPAAGF SSGATRGCPS CGNMAAPYPV ITALSSSVVA APPPSVSALF 240 ASSRPFLGPF TVHPVLRRHP SATS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952725.1	1e-107	homeobox-leucine zipper protein HOX7
Swissprot	A2X674	9e-69	HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBL	A0A368PMA8	1e-106	A0A368PMA8_SETIT; Uncharacterized protein
STRING	Si019736m	6e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12894	30	35