PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00426.1.g00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 38969.2 Da PI: 7.0011 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknr 76 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ ++ + ewyfFs++dkky+tg+r+nr Zmw_sc00426.1.g00150.1.sm.mkhc 10 VPPGFRFHPTDEELLYYYLRKKVSYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNR 87 69****************************.9***************943455444445******************** PP NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 at++g+Wkatg+dk+++ g+ +gl+ktLvfy grap+g+ktdW+mheyrl Zmw_sc00426.1.g00150.1.sm.mkhc 88 ATAAGFWKATGRDKAIFLGnAGSRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 140 *****************9767788***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-59 | 5 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.522 | 10 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-27 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MHPSRSPLSV PPGFRFHPTD EELLYYYLRK KVSYEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQDEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIFLGNAGS RIGLRKTLVF 120 YIGRAPHGKK TDWIMHEYRL DEDNVEVRQV PEDGWVVCRV FKKKSIQRSF EQPSMAPGDE 180 DELQSLTPVD QKQALHQHLM HGGFPAFDPS MHLPQLASPD AIPGPGVAPA FMSGTLPATM 240 NPLEMGCSSQ YTAKLTTTAL AGGNAGESLL NSGDRFGEAS ADWSILDKLL ASHQNLDQLV 300 HGKFGGVAVE APRHYQQQQL LMEMGSSSLQ GLPLHYLGCE ATDLVKFSK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 8 | 165 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 8 | 165 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 8 | 165 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 8 | 165 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-52 | 8 | 165 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 8 | 165 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827212.1 | 0.0 | NAC domain-containing protein 76-like | ||||
Swissprot | Q5Z6B6 | 1e-107 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A1E5VY61 | 0.0 | A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment) | ||||
STRING | Pavir.Ab01037.1.p | 1e-179 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Publications ? help Back to Top | |||
---|---|---|---|
|