PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00423.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 25985 Da PI: 5.2716

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00423.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Zmw_sc00423.1.g00150.1.sm.mkhc 61 KKRRLSDEQARFLEMRFREERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 114 56689***********************************************99 PP
2	HD-ZIP_I/II	110.2	1.5e-35	61	152	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 kkrrls+eq+++LE+ F+ee+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da + +n++L Zmw_sc00423.1.g00150.1.sm.mkhc 61 KKRRLSDEQARFLEMRFREERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRAAHDAAVLQNCHL 139 9**************************************************************************** PP HD-ZIP_I/II 81 ekeveeLreelke 93 e+e +L+++l+e Zmw_sc00423.1.g00150.1.sm.mkhc 140 ETELLKLKDRLAE 152 ******99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.827	56	116	IPR001356	Homeobox domain
SMART	SM00389	1.9E-15	59	120	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.94E-16	60	122	IPR009057	Homeodomain-like
CDD	cd00086	9.20E-14	61	116	No hit	No description
Pfam	PF00046	6.6E-16	61	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-16	61	114	IPR009057	Homeodomain-like
PRINTS	PR00031	5.2E-6	87	96	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.2E-6	96	112	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGGEAVERLL FPSFAFVDQT ESFAEAVDTS GSGGEQKKAR QRRRQKPKPV ADGEPGDEQA 60 KKRRLSDEQA RFLEMRFREE RKLETPRKVQ LAAELGLDAK QVAVWFQNRR ARHKSKLMEE 120 EFAKLRAAHD AAVLQNCHLE TELLKLKDRL AEAEEEKDKL IAAAAAATAG GGAGSSSPSS 180 SSFSTVTCNP AALVGQFRVE DEAADFSYMG QYAYNEYMMD FAAGYFGGVA DDQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	63	RRRQKPKPVADGEPGDEQAKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985327.1	6e-98	homeobox-leucine zipper protein HOX12
Swissprot	Q10QF2	1e-79	HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBL	K4AEE8	1e-96	K4AEE8_SETIT; Uncharacterized protein
STRING	Si037255m	2e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Gao S,Fang J,Xu F,Wang W,Chu C Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1. Plant Cell, 2016. 28(3): p. 680-95 [PMID:26977084]