PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00420.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 327aa MW: 36689.1 Da PI: 6.2454

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00420.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.3	8.7e-55	88	216	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat+ Zmw_sc00420.1.g00160.1.am.mk 88 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATR 167 79**************************.99**********85335566888******************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWk+tgkd++vl+++g+ +g+kktLv+y+grap+g++tdWvmheyrl Zmw_sc00420.1.g00160.1.am.mk 168 AGYWKSTGKDRRVLHHGGRPIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 216 *********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-65	81	239	IPR003441	NAC domain
PROSITE profile	PS51005	60.251	88	239	IPR003441	NAC domain
Pfam	PF02365	1.9E-29	89	216	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAYLLKLEEL DLDDGERVSR AGGAHLIRLR CVSAQREAEQ ARYLCHQLAS LCASPTTGGQ 60 LGCGTTTTSR PGHHRRRSET SMAARAGLPP GFRFHPTDEE LVNYYLKRKI HGLKIELDII 120 PEVDLYKCEP WELADKSFLP SRDPEWYFFG PRDRKYPNGF RTNRATRAGY WKSTGKDRRV 180 LHHGGRPIGM KKTLVYYRGR APQGVRTDWV MHEYRLDDKD AEDTLPIQDT YALCRVFKKN 240 AICTEVDDLQ AQCSMALLEG ARQQLLPSGS QEYETLSPDV PVGSTSGGAD EDADKDDSWM 300 QFISDDAWCS STADGAEEST SCVALAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-53	72	241	1	167	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-53	72	241	1	167	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-53	72	241	1	167	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-53	72	241	1	167	NO APICAL MERISTEM PROTEIN
4dul_A	7e-53	72	241	1	167	NAC domain-containing protein 19
4dul_B	7e-53	72	241	1	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803496.1	1e-174	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	7e-78	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A2S3H233	1e-173	A0A2S3H233_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EVM3	1e-173	A0A2T7EVM3_9POAL; Uncharacterized protein
STRING	Pavir.Bb02627.1.p	1e-172	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]