PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00418.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 328aa MW: 34800.3 Da PI: 8.1635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00418.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.1e-11	147	193	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR r+ +++ +Lr l+P+ +K++Ka+i AveY+ksLq Zmw_sc00418.1.g00090.1.sm.mkhc 147 KTVVLERKRRVRMTEKLYQLRLLVPNI-----TKMDKASIIGDAVEYVKSLQ 193 55679*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.32E-12	141	193	No hit	No description
SuperFamily	SSF47459	9.81E-16	143	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.199	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	145	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	147	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-12	149	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MERHLLPPQQ HLMPSSGFFN LSGGGVAHFP SCGGCGFAAT PVGLLHDCGW AGEHPMQLGA 60 EMFGGGVSTV GGALVGNQAV WQCVDGSSSR DPSQAPAGII SLDGDGDDGR PPLAVTERES 120 VPELAAEPRR NEGNVVMGAK KRKDRAKTVV LERKRRVRMT EKLYQLRLLV PNITKMDKAS 180 IIGDAVEYVK SLQSHARKLK EEVAALEARQ WSSSPGPQDP RHDRGVAVAN DKRQDEDATG 240 GARVASVGAT QVGQGRFLVT VECERRDGAA ARLFAAVESL ACFRVESSSV GRSAPDRLVS 300 TATLKVTIAG GGAAHSFRHA LDARLHDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	155	KRKDRAKTVVLERKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826116.1	1e-87	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X2
TrEMBL	A0A2S3I6T6	3e-86	A0A2S3I6T6_9POAL; Uncharacterized protein
STRING	Pavir.Ga01979.1.p	1e-84	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5546	30	57