PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00408.1.g00390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 325aa MW: 37246.6 Da PI: 6.3846 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.2 | 1.7e-26 | 123 | 169 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk + Zmw_sc00408.1.g00390.1.am.mk 123 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYH 169 79******************************************976 PP | |||||||
2 | K-box | 58.5 | 2.9e-20 | 178 | 245 | 1 | 68 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 yq++ g+sl+ +++e++q+ l+ Lk+ ++nL++e+R+++GedL+sL+++eL+ Leq+++ +lk+++ Zmw_sc00408.1.g00390.1.am.mk 178 YQQTVGNSLWVEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDSLEFEELRALEQNVDVALKEVKHS 245 7899999**********************************************************864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.333 | 115 | 175 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-37 | 115 | 174 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-31 | 116 | 202 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.14E-39 | 116 | 187 | No hit | No description |
PRINTS | PR00404 | 5.9E-26 | 117 | 137 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-23 | 124 | 169 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-26 | 137 | 152 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-26 | 152 | 173 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-12 | 189 | 245 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.52 | 191 | 276 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MTSAAHARWE WGLDDSQWIE LLDERDDRQA SLPRRDRQRR AADRPTDRPA DRSRCEATQR 60 PYRAALGWFS HAHAHWPRER VTVLAGLAWH GAPLFHEEEE EDKLAGTAED LEKKMGRGKI 120 EIKRIENATN RQVTYSKRRT GIMKKARELT VLCDAQVAII MFSSTGKYHD IKTIFDRYQQ 180 TVGNSLWVEQ YENMQRTLSH LKDINRNLRT EIRQRMGEDL DSLEFEELRA LEQNVDVALK 240 EVKHSYEAYK NLQQELTHES SSEDVFVQGM REEPAYGFVD NTGAGWDGAV ALGGGAAADM 300 YALRVVPSQP NLHGVAYGSH DLRLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-14 | 115 | 167 | 1 | 53 | MEF2C |
5f28_B | 1e-14 | 115 | 167 | 1 | 53 | MEF2C |
5f28_C | 1e-14 | 115 | 167 | 1 | 53 | MEF2C |
5f28_D | 1e-14 | 115 | 167 | 1 | 53 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 39 | RQASLPRRDRQRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812646.1 | 1e-125 | MADS-box transcription factor 16 | ||||
Swissprot | Q944S9 | 1e-105 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | A0A2S3HGN1 | 1e-123 | A0A2S3HGN1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DU70 | 1e-123 | A0A2T7DU70_9POAL; Uncharacterized protein | ||||
STRING | Si007221m | 1e-120 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |