PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00403.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 416aa MW: 43699.5 Da PI: 4.8084

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00403.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.9	2.2e-13	225	275	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l +++ Zmw_sc00403.1.g00270.1.sm.mkhc 225 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQK 275 679**************************************9888766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-15	221	285	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	223	277	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.6E-10	224	277	No hit	No description
SuperFamily	SSF57959	1.75E-9	225	274	No hit	No description
Pfam	PF00170	1.2E-10	225	273	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	4.9E-49	292	409	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MERVFSVEEI PNPYWAPQQP QAPATGAAVA PVGGGGGPGG QGGGAAVDGA GAMNRCPSEW 60 YFQKFLEEAV LDSPGPGTSA GRGLGGVDAV ETKPPVGTPG ATSSAAVDPM EYNAMLKQKL 120 EKDLAAVAMW RASSAMPPER SAAAPSLPNV EVSHVGSLNS IGGYGIPVQS KPADRPSGGL 180 GLQVVQNVDA IVKQATSSSS REPSDDDDME GEAETTGNEN PVQQRLQRRK QSNRESARRS 240 RSRKAAHLNE LEAQVAQLRV ENSSLLRRLA DVNQKFNDAA VDNRVLKADV ETLRAKVKMA 300 EDSVKRATGM NALFPAVSDM SSLSMPFQGS PSDSTSDAAI PLQDDPNSYF ATPSEVRANN 360 SYMPDIASST QEDEDFVNAA LAACKMDRTA SLQRVASLEH LQKRMCGGPA SSGSTS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MERVFSVEEI PNPYWAPQQP QAPATGAAVA PVGGGGGPGG QGGGAAVDGA GAMNRCPSEW  60
YFQKFLEEAV LDSPGPGTSA GRGLGGVDAV ETKPPVGTPG ATSSAAVDPM EYNAMLKQKL  120
EKDLAAVAMW RASSAMPPER SAAAPSLPNV EVSHVGSLNS IGGYGIPVQS KPADRPSGGL  180
GLQVVQNVDA IVKQATSSSS REPSDDDDME GEAETTGNEN PVQQRLQRRK QSNRESARRS  240
RSRKAAHLNE LEAQVAQLRV ENSSLLRRLA DVNQKFNDAA VDNRVLKADV ETLRAKVKMA  300
EDSVKRATGM NALFPAVSDM SSLSMPFQGS PSDSTSDAAI PLQDDPNSYF ATPSEVRANN  360
SYMPDIASST QEDEDFVNAA LAACKMDRTA SLQRVASLEH LQKRMCGGPA SSGSTS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981429.1	0.0	bZIP transcription factor RISBZ2 isoform X1
Refseq	XP_022679227.1	0.0	bZIP transcription factor RISBZ2 isoform X2
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A1D8RJ53	0.0	A0A1D8RJ53_ELECO; Opaque 2 protein
STRING	Pavir.J01091.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]