PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00401.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 24490.9 Da PI: 8.9952 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.8e-13 | 14 | 56 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 rg W++eEde+l++++ +G g+W+ ++++ g R++k+c++r Zmw_sc00401.1.g00120.1.sm.mk 14 RGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGHQRCRKSCRLR 56 788*****************************88*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 6 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.108 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-5 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 14 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.45E-13 | 16 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.31E-10 | 17 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-4 | 56 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 92 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MGHHSCCNEQ KVKRGLWSPE EDEKLIRYIS THGYGCWSEV PEKAGHQRCR KSCRLRPDIR 60 RGRLSAEEEK LIISLHAIVG NRTEFKSNKN YWYSWIKKKI RKPASTTSSS VSLPCSTVTA 120 ASDTAHGHLQ TLPFSVADQQ LDAIISQGLA LPSSKLAAGQ DSPPTEPLPP PHCPFFMFDT 180 NVSLPSSLSP AAATQLQHPS LTFTTAAMTC RATSCLRWWT A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822193.1 | 3e-93 | myb-related protein 308 | ||||
TrEMBL | A0A2T7D3G1 | 1e-94 | A0A2T7D3G1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00364.1.p | 3e-87 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6032 | 37 | 57 |