PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00401.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 22612.7 Da PI: 10.7495 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.6e-15 | 98 | 142 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky Zmw_sc00401.1.g00080.1.sm.mkhc 98 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 142 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.968 | 91 | 147 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.1E-18 | 92 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.0E-19 | 94 | 146 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-11 | 95 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 98 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.81E-11 | 98 | 143 | No hit | No description |
Pfam | PF00249 | 9.0E-13 | 98 | 142 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSRAPMTRDA RPGAMRLFGV TIAPAPEVDP SSQDPSPNPP LAAREDVMRK CKSMGNLAAV 60 AAASVDGSGA GDGYHSDDGL MQSSGKRRRA QERKKAVPWT EEEHRTFLAG LEKLGKGDWR 120 GIAKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD MMLGDAEVVS SSNTGNVESR 180 VERNLPPIPP FKPTSKDSSF SKLNLMV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 154 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00573 | DAP | Transfer from AT5G61620 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008676506.1 | 1e-95 | putative MYB DNA-binding domain superfamily protein isoform X1 | ||||
Swissprot | Q7XC57 | 1e-42 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A446YHL6 | 5e-96 | A0A446YHL6_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BL_C184D0525.1 | 3e-95 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5858 | 36 | 52 |
Publications ? help Back to Top | |||
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