PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00399.1.g00240.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 822aa    MW: 88656.9 Da    PI: 8.9728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00399.1.g00240.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.63.4e-30515613193
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++g
  Zmw_sc00399.1.g00240.1.am.mk 515 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 595
                                   89***************************955556889******************************************* PP

                                   -EEEEEE-.SS.SEE..E CS
                            B3  78 DfvvFkld.gr.sefelv 93 
                                   D+++F++  g+  + +l+
  Zmw_sc00399.1.g00240.1.am.mk 596 DTITFSRGaGEaARDRLF 613
                                   ******653444555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-41505621IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-28512603IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-25513602No hitNo description
PfamPF023621.2E-27515618IPR003340B3 DNA binding domain
PROSITE profilePS5086314.24515620IPR003340B3 DNA binding domain
SMARTSM010191.1E-22515620IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MIEACWAVSS PHIEARCVGT ARSHACCTDH DQLINNTDTH GRSILCRSVV PVLVIHSVLT  60
RQAEERKRTR SSNKDSVRRV DLLRSLSLPI QAWARARTTT PPPIVRSPAK SNKAHRFALF  120
GSPAKFDSPR SLCGGAAGTH GAACALQIAV NFDRIGSSWC KYKHRGFSPF DEGNTAPGRN  180
EQSRKPGVRK LARICRAETF PALIACDHRL ATPSVRGICL RLRWATARVS RLIPHSRPPS  240
HIMTRTSSHE PNQLIHSGPH PSPAILQSYS YTYAAVQRCD PAVTFQESSR AVPPSLTSPR  300
REKELVTTRC VSLPINLISL LAAASSDAHG QCEARRADEA LRIPASRSAV STSSDLKLAE  360
PNSLAYQHLL LVEVIPRLLF TLSTQQASEQ PNHRPAVRAL AGPSHRIDAA AEPHAPLKGG  420
EGIEEEAKGC AAFSKEEDEE EEQEHEEEDD DEASPREIPF MTAAAVSTAA ASSSSPSASA  480
SASALRSSDG AGASGSGGGG GGSDDVEVIE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY  540
FPLDSAANEK GLLLSFEDRA GKLWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTITF  600
SRGAGEAARD RLFIDWKRRA DVSDPHRLPR IPLPMPPAAS PYGPWGGGAG GFFMPPAPPA  660
TLYEHHRLRQ SLDFRNVNAA APARQLLFFG SAGMPPPGPM LPPPPPVHIT VQPSPAVTAG  720
LPMVLESVPL VNSPTAASKR LRLFGVNLDN PHPGGGESSH DANALSLRMP GWQRPSPLRL  780
FESPHHQPNV AGAAGVESSA ASSPSSSSSS KREAHSSLDL DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-595106223116B3 domain-containing transcription factor NGA1
5os9_B3e-595106223116B3 domain-containing transcription factor NGA1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168