PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00399.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 448aa MW: 49957.3 Da PI: 9.0332

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00399.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5e-15	92	136	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++ +++G g W++I +++g +t+ q++s+ qk+ Zmw_sc00399.1.g00090.1.sm.mkhc 92 REKWTEDEHKLFLESLELHGRG-WRRIQEHIG-SKTAVQIRSHAQKF 136 789*****************.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.04E-15	86	142	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.509	87	141	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-8	89	138	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-14	90	139	IPR006447	Myb domain, plants
SMART	SM00717	1.5E-11	91	139	IPR001005	SANT/Myb domain
Pfam	PF00249	4.5E-13	92	135	IPR001005	SANT/Myb domain
CDD	cd00167	5.27E-10	94	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MARFQEFEVN CDVGREYHQK NPLNSTAMDL PAEERMPKVR CTVHLSRKAS TTPPRIVILS 60 SSNELRISPN IKFTILAHYV QARKPYTISK QREKWTEDEH KLFLESLELH GRGWRRIQEH 120 IGSKTAVQIR SHAQKFFSKV TREASGDGNG TAAAPQIRIP PPRPKRKPTH PYPRKLGNSP 180 GKDTPSLKQL DKPRLQVVPS LYEQENGSPK SVLTTAQVVR SPASSVDSED RYPAPRIAAV 240 EVATQLPPYK VANDDTASKH ATCAIPESHV LRLFGKRVVV NGLHQQPNSD TRNQQNVADM 300 ELDASAEAPT SETEKTFSCG AAEANTLNPC LTDAHQFMYY FPRGKAEQPH YQPSQAADCR 360 FTSGEGSCTA SVTTSGGVPE TPTWNSDSVE SMQVINNEDE VIPVPGSRKC ANRTPDHLQG 420 FVPYKKWKMV QSKTPEVEAN REMTRLCL

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MARFQEFEVN CDVGREYHQK NPLNSTAMDL PAEERMPKVR CTVHLSRKAS TTPPRIVILS  60
SSNELRISPN IKFTILAHYV QARKPYTISK QREKWTEDEH KLFLESLELH GRGWRRIQEH  120
IGSKTAVQIR SHAQKFFSKV TREASGDGNG TAAAPQIRIP PPRPKRKPTH PYPRKLGNSP  180
GKDTPSLKQL DKPRLQVVPS LYEQENGSPK SVLTTAQVVR SPASSVDSED RYPAPRIAAV  240
EVATQLPPYK VANDDTASKH ATCAIPESHV LRLFGKRVVV NGLHQQPNSD TRNQQNVADM  300
ELDASAEAPT SETEKTFSCG AAEANTLNPC LTDAHQFMYY FPRGKAEQPH YQPSQAADCR  360
FTSGEGSCTA SVTTSGGVPE TPTWNSDSVE SMQVINNEDE VIPVPGSRKC ANRTPDHLQG  420
FVPYKKWKMV QSKTPEVEAN REMTRLCL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824173.1	1e-143	uncharacterized protein LOC112899782
TrEMBL	A0A2S3I9P7	1e-142	A0A2S3I9P7_9POAL; Uncharacterized protein
STRING	Pavir.Gb00859.1.p	1e-142	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86